Browse Element(s) Details


OsAffx.18129.1.S1_at

Description tigr:9638.m00358
TID=OsAffx.18129.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0449010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04470OsAffx.20764.1.S1_at11/1110+2091904..2093334hypothetical protein
LOC_Os10g04480OsAffx.30278.1.S1_at11/1110+2106745..2107886hypothetical protein
LOC_Os10g04490OsAffx.18129.1.S1_at10/1110+2112993..2115820hypothetical protein
LOC_Os10g04500OsAffx.18128.1.S1_at11/1110+2117317..2117652hypothetical protein
LOC_Os10g04510OsAffx.18129.2.S1_at11/1110+2127512..2128549expressed protein
LOC_Os10g04520Os.19044.1.S1_at9/1110+2131120..2132645expressed protein
LOC_Os10g04530OsAffx.20763.1.S1_at11/1110+2132830..2134112hypothetical protein
LOC_Os10g04540Os.19044.1.S1_at2/1110+2135413..2136864hypothetical protein
LOC_Os10g04540Os.46873.3.S1_at1/1110+2135413..2136864hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18129.1.S1_at--1075--10391Chr10:2113932..2113956 (25 bp)
TTTTGGAAGCGCGAACCCGATGGAC
LOC_Os10g04490
OsAffx.18129.1.S1_at--584--3011Chr10:2113992..2114016 (25 bp)
AATGCTATTGCGAGGCAGGCTCATC
LOC_Os10g04490
OsAffx.18129.1.S1_at--896--9951Chr10:2114127..2114151 (25 bp)
TACCCATCCGCATGAGCTTTTTGAT
LOC_Os10g04490
OsAffx.18129.1.S1_at--668--2951Chr10:2114153..2114177 (25 bp)
AAGGCCATCCAGTACATTTGACAGA
LOC_Os10g04490
OsAffx.18129.1.S1_at--709--4071Chr10:2114247..2114271 (25 bp)
CGACTTGATAACAGGCCGCATTTTT
LOC_Os10g04490
OsAffx.18129.1.S1_at--767--4891Chr10:2114264..2114288 (25 bp)
GCATTTTTCCACCAAAGGGCAATTT
LOC_Os10g04490
OsAffx.18129.1.S1_at--679--7651Chr10:2114303..2114327 (25 bp)
GGGAGTCCAGAATACCACCATACAC
LOC_Os10g04490
OsAffx.18129.1.S1_at--780--211Chr10:2114331..2114355 (25 bp)
ATTTGTTCACATGGCTCGCTTTTCT
LOC_Os10g04490
OsAffx.18129.1.S1_at--779--9811Chr10:2114373..2114397 (25 bp)
TAAACCGGAATCACACCTGTCAGGG
LOC_Os10g04490
OsAffx.18129.1.S1_at--1101--1851NONE
ACGTCCAAGATCGTGGGAAGCCCTT
NONE
OsAffx.18129.1.S1_at--210--371Chr10:2115728..2115752 (25 bp)
ATAATCGTGATCATTCCCGAGCTGG
LOC_Os10g04490
Target Sequence 
TTTTGGAAGCGCGAACCCGATGGACCATCCACAACTTGTCCCAATAGTTGAAGAATTTGCAATGCTATTGCGAGGCAGGC
TCATCCAAGCCAACATACTTGCAGATGTATTGAGAAAGAATTTGAATGTTCATTTCTGGCTTTTTGCATTGAAAGGGGTC
CAAATTACAGTCAAGAAGTATTTGTCCATGTATGGTACCCATCCGCATGAGCTTTTTGATCAAGGCCATCCAGTACATTT
GACAGACTATGTATTATATCCTGCAGATACTACAGAAAATGCCCCAAACAATGATTTACCTAAGTTGACATTTGGCGACT
TGATAACAGGCCGCATTTTTCCACCAAAGGGCAATTTTAATCTAGTTTCATGGGAGTCCAGAATACCACCATACACTTCA
TTTGTTCACATGGCTCGCTTTTCTCCAAGTCTTGCGGAAGATAAACCGGAATCACACCTGTCAGGGAGGAAACGTCCAAG
ATCGTGGGAAGCCCTTGCCAGCGCGGGGATAATCGTGATCATTCCCGAGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18129.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis