Browse Element(s) Details


OsAffx.18144.1.S1_at

Description tigr:9638.m00459
TID=OsAffx.18144.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0548011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05440OsAffx.30297.1.S1_at10/1110+2666403..2668479hypothetical protein
LOC_Os10g05440OsAffx.20752.1.S1_at1/1110+2666403..2668479hypothetical protein
LOC_Os10g05450NANA10+2671495..2671787hypothetical protein
LOC_Os10g05460OsAffx.30298.1.S1_x_at11/1110+2675508..2676540hypothetical protein
LOC_Os10g05470NANA10+2682950..2686575hypothetical protein
LOC_Os10g05480OsAffx.18144.1.S1_at11/1110+2689673..2690497expressed protein
LOC_Os10g05490Os.25153.1.S1_at11/1110+2693261..2696062Cytochrome P450 family protein, expressed
LOC_Os10g05500OsAffx.20750.1.S1_at10/1110+2700246..2703045F-box domain containing protein
LOC_Os10g05510OsAffx.30300.1.S1_x_at11/1110+2704438..2704791hypothetical protein
LOC_Os10g05510OsAffx.30300.1.S1_at11/1110+2704438..2704791hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18144.1.S1_at--1082--5591Chr10:2689706..2689730 (25 bp)
GACAAAAATGCCCTAATGGTCCCTT
LOC_Os10g05480
OsAffx.18144.1.S1_at--341--10191Chr10:2689815..2689839 (25 bp)
TATTTCTAGTATATCCGTGGGACCA
LOC_Os10g05480
OsAffx.18144.1.S1_at--764--8091Chr10:2689834..2689858 (25 bp)
GGACCACTTGGTCGTCGTGCTTGAT
LOC_Os10g05480
OsAffx.18144.1.S1_at--798--5671Chr10:2689879..2689903 (25 bp)
GACATTCACGGAATTCCTTGTGTTG
LOC_Os10g05480
OsAffx.18144.1.S1_at--477--5631Chr10:2690061..2690154 (25 bp)
GACACGATGGCCGAATTTTCAACAC
LOC_Os10g05480
OsAffx.18144.1.S1_at--303--5151Chr10:2690165..2690189 (25 bp)
GCAACCACCAGGCACTAACTTATGT
LOC_Os10g05480
OsAffx.18144.1.S1_at--1144--6471Chr10:2690191..2690215 (25 bp)
GATACTACATGTGCGAGATGCTTCA
LOC_Os10g05480
OsAffx.18144.1.S1_at--531--2371Chr10:2690375..2690399 (25 bp)
AAACCATTCTCAACTTGTGTGCAGA
LOC_Os10g05480
OsAffx.18144.1.S1_at--52--1271Chr10:2690397..2690421 (25 bp)
AGATATTTGTCGTTACATCCGCCAC
LOC_Os10g05480
OsAffx.18144.1.S1_at--355--551Chr10:2690413..2690437 (25 bp)
ATCCGCCACGATGTTTGTAACCATT
LOC_Os10g05480
OsAffx.18144.1.S1_at--795--9551Chr10:2690436..2690460 (25 bp)
TTTGGGCGAATTCTACGATCCGGAG
LOC_Os10g05480
Target Sequence 
GACAAAAATGCCCTAATGGTCCCTTCCACTTTGCCCGACCACTACATACTATTTCTAGTATATCCGTGGGACCACTTGGT
CGTCGTGCTTGATCCGGCACATTATGCCGAGAAGACATTCACGGAATTCCTTGTGTTGTTGAACTTAGCACACAAGTATT
ACAAAGACCAAAGCGGACGAGTAAAGGATGCCAGTAAGAGTAAGCTTCTCGTGAAGACACGATGGCCGAATTTTCAACAC
AGTGTTGCAAGCAACCACCAGGCACTAACTTATGTGGATACTACATGTGCGAGATGCTTCAAATTAATGGGAGATCATGT
CAATTCCATGGGTAGCAAACCTGTTCGACAAAAAAAACCATTCTCAACTTGTGTGCAGATATTTGTCGTTACATCCGCCA
CGATGTTTGTAACCATTTGGGCGAATTCTACGATCCGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18144.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis