Browse Element(s) Details


OsAffx.18167.2.S1_at

Description tigr:9631.m01367
TID=OsAffx.18167.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to lob domain protein 30. (mouse-ear cress
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1427011/11LOB domain protein 18, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14250Os.13708.1.S1_at11/113+7720007..7728422expressed protein
LOC_Os03g14260Os.10527.1.S1_a_at11/113+7733755..7742718Sec7 domain containing protein, expressed
LOC_Os03g14260Os.10527.1.S2_a_at11/113+7733755..7742718Sec7 domain containing protein, expressed
LOC_Os03g14260Os.10527.1.S3_a_at11/113+7733755..7742718Sec7 domain containing protein, expressed
LOC_Os03g14260Os.14713.1.S1_at1/113+7733755..7742718Sec7 domain containing protein, expressed
LOC_Os03g14270OsAffx.18167.2.S1_at11/113+7746115..7747754LOB domain protein 18, putative
LOC_Os03g14280Os.6658.1.S1_at10/113+7752775..7758918Clp amino terminal domain containing protein, expressed
LOC_Os03g14290Os.47951.1.S1_at11/113+7761510..7763848expressed protein
LOC_Os03g14300Os.49217.1.S1_at11/113+7767861..7768646expressed protein
LOC_Os03g14310Os.17054.1.S1_at11/113+7771712..7774776expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18167.2.S1_at--1020--5051Chr03:7746556..7746576 (21 bp)
GCAGCAGGTGGTGAATCTCCAGGCC
LOC_Os03g14270
OsAffx.18167.2.S1_at--658--1531Chr03:7746554..7746576 (23 bp)
AGCAGGTGGTGAATCTCCAGGCCGA
LOC_Os03g14270
OsAffx.18167.2.S1_at--590--1051Chr03:7746551..7746575 (25 bp)
AGGTGGTGAATCTCCAGGCCGAGCT
LOC_Os03g14270
OsAffx.18167.2.S1_at--301--4071Chr03:7746532..7746556 (25 bp)
CGAGCTGACCTACTTGCAAGCCCAC
LOC_Os03g14270
OsAffx.18167.2.S1_at--1085--4111Chr03:7746359..7746383 (25 bp)
CGCAGCCGCAATGGGCATCGCCGCT
LOC_Os03g14270
OsAffx.18167.2.S1_at--1050--3971Chr03:7746187..7746211 (25 bp)
CGGTGGAGACCTTCAGGCGCTCGCA
LOC_Os03g14270
OsAffx.18167.2.S1_at--340--8551Chr03:7746184..7746208 (25 bp)
TGGAGACCTTCAGGCGCTCGCAAGG
LOC_Os03g14270
OsAffx.18167.2.S1_at--1102--5891Chr03:7746159..7746183 (25 bp)
GAGCTCCTGGATCGCCACAGGTCCG
LOC_Os03g14270
OsAffx.18167.2.S1_at--1027--8551Chr03:7746152..7746176 (25 bp)
TGGATCGCCACAGGTCCGCAGTGAA
LOC_Os03g14270
OsAffx.18167.2.S1_at--1162--531Chr03:7746149..7746173 (25 bp)
ATCGCCACAGGTCCGCAGTGAAGCT
LOC_Os03g14270
OsAffx.18167.2.S1_at--320--4371Chr03:7746145..7746169 (25 bp)
CCACAGGTCCGCAGTGAAGCTCGAG
LOC_Os03g14270
Target Sequence 
GCAGCAGGTGGTGAATCTCCAGGCCGAGCTGACCTACTTGCAAGCCCACCTCGCCACGCTGGAGCTGCCGTCCCCGCCGC
CGCTGATGCCGGCGCCGCCGCAGATGCCGATGCCGGCGCCGTTCTCCATCTCGGACCTCCCGTCGTCGACGAGCGTCCCG
ACCACCGTCGACCTCTCAGCTCTCTTCGACCCGCCGCCGCAGCCGCAATGGGCATCGCCGCTCCAGCAGCAGCAGCACCA
CCACCACCAGCACCATCATCACCAACAGCAGCAGCACCAGCTCCGGCAGCCCTCATATGCCACGCTGGCCAGGGCGCCGT
CCGGCATGACGGCGGCGGCGGAGAGCTCGGGAGGAGGAGGAGGAGGCGGCGGTGGAGACCTTCAGGCGCTCGCAAGGGAG
CTCCTGGATCGCCACAGGTCCGCAGTGAAGCTCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18167.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis