Browse Element(s) Details


OsAffx.18177.1.S1_s_at

Description gb:NM_195059.1
DB_XREF= gi:37531477
TID=OsAffx.18177.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0081F12.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0883011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08780Os.8682.1.S1_a_at11/1110+4523660..4524225expressed protein
LOC_Os10g08780Os.8682.1.S1_at11/1110+4523660..4524225expressed protein
LOC_Os10g08780Os.8682.2.S1_x_at8/1110+4523660..4524225expressed protein
LOC_Os10g08790NANA10+4528942..4529406hypothetical protein
LOC_Os10g08800NANA10+4530512..4531009retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08810Os.27691.1.S1_x_at1/1110+4532950..4534102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08820NANA10+4534354..4538919retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08830OsAffx.18177.1.S1_s_at11/1110+4541783..4547061hypothetical protein
LOC_Os10g08830Os.41415.1.S1_at2/1110+4541783..4547061hypothetical protein
LOC_Os10g08830Os.27180.1.S1_at1/1110+4541783..4547061hypothetical protein
LOC_Os10g08840Os.10449.1.S1_a_at11/1110+4549322..4554791esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os10g08850OsAffx.6609.1.S1_x_at11/1110+4556819..4558621Nodulin-like family protein, expressed
LOC_Os10g08850OsAffx.6609.1.S1_at11/1110+4556819..4558621Nodulin-like family protein, expressed
LOC_Os10g08879OsAffx.6610.1.A1_at11/1110+4566559..4582135Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os10g08879Os.46716.1.S1_at11/1110+4566559..4582135Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os10g08879Os.46716.2.S1_at10/1110+4566559..4582135Nucleotide-sensitive chloride conductance regulator family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18177.1.S1_s_at--612--951Chr10:4542267..4542291 (25 bp)
AGGACAACGGCCACTGCGTGGACGA
LOC_Os10g08830
OsAffx.18177.1.S1_s_at--799--2191Chr10:4542264..4542288 (25 bp)
ACAACGGCCACTGCGTGGACGACGA
LOC_Os10g08830
OsAffx.18177.1.S1_s_at--592--8251Chr10:4542193..4542217 (25 bp)
GGCACGGCTCCAGAGCATAGGCGTA
LOC_Os10g08830
OsAffx.18177.1.S1_s_at--24--1551Chr10:4542180..4542204 (25 bp)
AGCATAGGCGTAGCGGGTGGTGCGC
LOC_Os10g08830
OsAffx.18177.1.S1_s_at--988--7731Chr10:4542165..4542189 (25 bp)
GGTGGTGCGCGATGCCCGAGGGAGC
LOC_Os10g08830
OsAffx.18177.1.S1_s_at--624--5931Chr10:4542144..4542168 (25 bp)
GAGCAGCGTGGCACACGCAGTCAAG
LOC_Os10g08830
OsAffx.18177.1.S1_s_at--800--4411Chr10:4542037..4542061 (25 bp)
GCCACCAGCTATAAGAGGGCGCGGT
LOC_Os10g08830
OsAffx.18177.1.S1_s_at--582--4051Chr10:4541997..4542021 (25 bp)
CGATGCGGATGTGGTCGGCACTACA
LOC_Os10g08830
OsAffx.18177.1.S1_s_at--722--6031Chr10:4541933..4541957 (25 bp)
GAGATCCCTGTCCATAGCGGCGGAT
LOC_Os10g08830
OsAffx.18177.1.S1_s_at--960--6371Chr10:4541931..4541955 (25 bp)
GATCCCTGTCCATAGCGGCGGATGC
LOC_Os10g08830
OsAffx.18177.1.S1_s_at--897--291Chr10:4541920..4541944 (25 bp)
ATAGCGGCGGATGCCGCTGTCTTCG
LOC_Os10g08830
Target Sequence 
AGGACAACGGCCACTGCGTGGACGACGAGGGTGGCGCCGTGGGCGCGGCGTGCCCTGGGGAGGGGGGGACGGCGGGCACG
GCTCCAGAGCATAGGCGTAGCGGGTGGTGCGCGATGCCCGAGGGAGCAGCGTGGCACACGCAGTCAAGGGGGAGGAGGCG
GTGGCGCAGCGGCGCGAGGATGGAGGGGGAGCACACGGCCGGCCTTCACGCCATGGCGGTGGTGGCCGCCGCCACCAGCT
ATAAGAGGGCGCGGTGGGGGTGGCTCCGCCCGATGCGGATGTGGTCGGCACTACAGGGGAGGTGGGTAGTGACGCTGAGG
AGGACGTTGTCGGGGAGATCCCTGTCCATAGCGGCGGATGCCGCTGTCTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18177.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis