Browse Element(s) Details


OsAffx.18196.1.S1_at

Description gb:NM_195140.1
DB_XREF= gi:37531639
TID=OsAffx.18196.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0051J07.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0977011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09740OsAffx.6623.1.S1_at11/1110+5035196..5036834hypothetical protein
LOC_Os10g09750OsAffx.30361.1.S1_at10/1110+5041443..5042093hypothetical protein
LOC_Os10g09760OsAffx.18195.1.S1_at11/1110+5044197..5044844expressed protein
LOC_Os10g09770OsAffx.18196.1.S1_at11/1110+5052329..5052742hypothetical protein
LOC_Os10g09780OsAffx.20679.1.S1_at11/1110+5056051..5057154hypothetical protein
LOC_Os10g09780Os.25513.1.S1_at1/1110+5056051..5057154hypothetical protein
LOC_Os10g09790OsAffx.8429.1.S1_at10/1110+5060802..5063058expressed protein
LOC_Os10g09800Os.46715.1.S1_x_at11/1110+5066318..5068260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09800Os.46715.1.S1_at10/1110+5066318..5068260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09810OsAffx.361.1.S1_at11/1110+5068846..5075243retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18196.1.S1_at--1099--2731Chr10:5052619..5052643 (25 bp)
AAGAAGGAGATCAACCAGCCGCCGG
LOC_Os10g09770
OsAffx.18196.1.S1_at--475--4211Chr10:5052598..5052622 (25 bp)
CCGGCGACCTCCACAGGAGGGAAGC
LOC_Os10g09770
OsAffx.18196.1.S1_at--213--6271Chr10:5052532..5052556 (25 bp)
GATGTGAGGCCAAAGCTGCAACCGA
LOC_Os10g09770
OsAffx.18196.1.S1_at--549--4371Chr10:5052523..5052547 (25 bp)
CCAAAGCTGCAACCGACGACGTCGT
LOC_Os10g09770
OsAffx.18196.1.S1_at--1043--4231Chr10:5052474..5052498 (25 bp)
CCGTACGCGCGGACACGAAGCCGAG
LOC_Os10g09770
OsAffx.18196.1.S1_at--1122--5611Chr10:5052463..5052487 (25 bp)
GACACGAAGCCGAGGAAGCACCCGG
LOC_Os10g09770
OsAffx.18196.1.S1_at--64--9971Chr10:5052431..5052455 (25 bp)
TACCGCGAGGGCTCACCGTGGAGTG
LOC_Os10g09770
OsAffx.18196.1.S1_at--42--8411Chr10:5052396..5052420 (25 bp)
GGCGCGCAGCTTCTCGACAGACGAC
LOC_Os10g09770
OsAffx.18196.1.S1_at--589--10591Chr10:5052386..5052410 (25 bp)
TTCTCGACAGACGACGCCGGCGAAA
LOC_Os10g09770
OsAffx.18196.1.S1_at--128--4091Chr10:5052375..5052399 (25 bp)
CGACGCCGGCGAAAGATGAATCTGC
LOC_Os10g09770
OsAffx.18196.1.S1_at--210--9011Chr10:5052359..5052383 (25 bp)
TGAATCTGCGAACTTCATGCTGATG
LOC_Os10g09770
Target Sequence 
AAGAAGGAGATCAACCAGCCGCCGGCGACCTCCACAGGAGGGAAGCGGCGGCTAGCCACCACCCCCGCCGCCGCGACGAC
CAGGGCGGATGTGAGGCCAAAGCTGCAACCGACGACGTCGTCCAGGCCGGCGGCGGGTGCTGCCGCCGTACGCGCGGACA
CGAAGCCGAGGAAGCACCCGGCGGCGGCTACCGCGAGGGCTCACCGTGGAGTGGAGCATCGGCGGCGCGCAGCTTCTCGA
CAGACGACGCCGGCGAAAGATGAATCTGCGAACTTCATGCTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18196.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis