Browse Element(s) Details


OsAffx.18201.1.S1_at

Description tigr:9638.m00887
TID=OsAffx.18201.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1014010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10119NANA10+5300231..5300554NA
LOC_Os10g10130Os.23327.2.S1_a_at11/1110+5304095..5310653Calcium binding EGF domain containing protein, expressed
LOC_Os10g10130Os.9996.2.S1_at1/1110+5304095..5310653Calcium binding EGF domain containing protein, expressed
LOC_Os10g10140OsAffx.18201.1.S1_at10/1110+5324678..5329970hypothetical protein
LOC_Os10g10140OsAffx.12179.1.S1_at2/1110+5324678..5329970hypothetical protein
LOC_Os10g10140OsAffx.12179.1.S1_x_at1/1110+5324678..5329970hypothetical protein
LOC_Os10g10140OsAffx.1257.1.S1_at1/1110+5324678..5329970hypothetical protein
LOC_Os10g10149Os.55619.1.S1_at11/1110+5334899..5335998expressed protein
LOC_Os10g10160OsAffx.6631.1.S1_at11/1110+5336964..5340250hypothetical protein
LOC_Os10g10170Os.19627.1.S1_a_at11/1110+5343540..5351016pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18201.1.S1_at--374--2511NONE
AACATTATCCCAGAAGATTCGCCAA
NONE
OsAffx.18201.1.S1_at--286--2532Chr10:5327358..5327382 (25 bp)
AACTTTGACCTCCTTATGTTCGTGG
LOC_Os10g10140
OsAffx.18201.1.S1_at--220--6151Chr10:5327410..5327434 (25 bp)
GAGGTATCACTAGTAATGGCCCCAA
LOC_Os10g10140
OsAffx.18201.1.S1_at--1075--1151Chr10:5327421..5327445 (25 bp)
AGTAATGGCCCCAACCAGTATGGTT
LOC_Os10g10140
OsAffx.18201.1.S1_at--153--831Chr10:5327440..5327464 (25 bp)
ATGGTTACCGCAACATACAGCAGAA
LOC_Os10g10140
OsAffx.18201.1.S1_at--894--1431Chr10:5327509..5327533 (25 bp)
AGAACTCGTGGGATGTCACTCACCG
LOC_Os10g10140
OsAffx.18201.1.S1_at--1036--8611Chr10:5327547..5327571 (25 bp)
TGGTGTCACCTTCAATCATCTGCAA
LOC_Os10g10140
OsAffx.18201.1.S1_at--70--471Chr10:5327564..5327588 (25 bp)
ATCTGCAACAGATCTTGGCCGGGAC
LOC_Os10g10140
OsAffx.18201.1.S1_at--691--5891Chr10:5327594..5327618 (25 bp)
GAGCGGCACTATTATTGCCCCAGAT
LOC_Os10g10140
OsAffx.18201.1.S1_at--656--10491Chr10:5329744..5329768 (25 bp)
TTAAGGACCGTCGACACTAACAATG
LOC_Os10g10140
OsAffx.18201.1.S1_at--974--2531Chr10:5329808..5329832 (25 bp)
AACTACTATCTGGTGCTCAAATGCG
LOC_Os10g10140
Target Sequence 
AACATTATCCCAGAAGATTCGCCAAAAATACGACAACTTTGACCTCCTTATGTTCGTGGAAATATATCGTGATGAGATCT
ATGCGGGAGGTATCACTAGTAATGGCCCCAACCAGTATGGTTACCGCAACATACAGCAGAAGCTCAAGGCACAGCTGAAC
GAGGACTTCTCGAAACAAAAAATCAAGAACTCGTGGGATGTCACTCACCGTCGTTATGCAAATTGGTGTCACCTTCAATC
ATCTGCAACAGATCTTGGCCGGGACCCTGAGAGCGGCACTATTATTGCCCCAGATGAGTGGTGGAAAGGGGTATTGATGG
TCAAATATTATGATTTAAGGACCGTCGACACTAACAATGGTGGGAAAGGGACAACAGTGAAATACATTACCTCTAAGCAA
CTACTATCTGGTGCTCAAATGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18201.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis