Browse Element(s) Details


OsAffx.18219.1.S1_at

Description tigr:9638.m01015
TID=OsAffx.18219.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1134010/11nitroreductase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11280OsAffx.8397.1.S1_at11/1110+6023789..6028093retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g11290NANA10+6030061..6031547retrotransposon protein, putative, unclassified
LOC_Os10g11310Os.46498.1.S1_at11/1110+6037808..6041839expressed protein
LOC_Os10g11310Os.46498.2.S1_x_at7/1110+6037808..6041839expressed protein
LOC_Os10g11320OsAffx.18218.1.S1_at11/1110+6048125..6048670expressed protein
LOC_Os10g11330Os.20602.2.S1_x_at11/1110+6049861..6052041hAT family dimerisation domain containing protein
LOC_Os10g11340OsAffx.18219.1.S1_at10/1110+6052816..6055864nitroreductase family protein, putative
LOC_Os10g11354Os.26859.1.S1_at11/1110+6060932..6066946MATE efflux family protein, expressed
LOC_Os10g11370OsAffx.18220.1.S1_x_at11/1110+6069281..6072434Protease inhibitor/seed storage/LTP family protein
LOC_Os10g11384Os.14491.2.S1_x_at2/1110+6073493..6078421transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11384Os.47463.1.S1_x_at1/1110+6073493..6078421transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016657molecular_functionoxidoreductase activity, acting on NADH or NADPH, nitrogenous group as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18219.1.S1_at--1011--2851Chr10:6054009..6054033 (25 bp)
AAGTGCTCTGCCATTTCGTGTCTTG
LOC_Os10g11340
OsAffx.18219.1.S1_at--968--5311Chr10:6054046..6054070 (25 bp)
GAAGTGCATGCCACGTTGTTTGTGC
LOC_Os10g11340
OsAffx.18219.1.S1_at--467--3591Chr10:6054124..6054148 (25 bp)
CATTTTGATATGTTGCGGCGTGCCA
LOC_Os10g11340
OsAffx.18219.1.S1_at--811--871Chr10:6054191..6054215 (25 bp)
ATGGCCTCCCATTGTACAGGCTGAT
LOC_Os10g11340
OsAffx.18219.1.S1_at--835--9071Chr10:6054253..6054535 (25 bp)
TGCTTTCAGGACATTGCCTCACATG
LOC_Os10g11340
OsAffx.18219.1.S1_at--397--3311Chr10:6054530..6054554 (25 bp)
CACATGGATGTTTTAGCCTAGGGAT
LOC_Os10g11340
OsAffx.18219.1.S1_at--223--2831Chr10:6054638..6054662 (25 bp)
AAGTTCTTTACCTTGAGGCCCATGC
LOC_Os10g11340
OsAffx.18219.1.S1_at--740--891Chr10:6054653..6054677 (25 bp)
AGGCCCATGCTGTTGGAATATCTGC
LOC_Os10g11340
OsAffx.18219.1.S1_at--64--4751NONE
GCTGTTCATGAGGTACTTGGCTTAA
NONE
OsAffx.18219.1.S1_at--380--6891Chr10:6055780..6055804 (25 bp)
GTATCATTTTACAGTGGGTGCACCT
LOC_Os10g11340
OsAffx.18219.1.S1_at--198--7711Chr10:6055795..6055819 (25 bp)
GGGTGCACCTGTACTTGACAAGCGG
LOC_Os10g11340
Target Sequence 
AAGTGCTCTGCCATTTCGTGTCTTGCCATGGGACGCAGAAGTGCATGCCACGTTGTTTGTGCACCGTGTCTCAGAGCTGC
CCAAGGGATTGTATTTCTTGGTGAGGAATGAGGAGCATTTTGATATGTTGCGGCGTGCCATGAGGCAGGACTTTGAGTGG
GAACGACCTGAGGGGTGCCCTGATGGCCTCCCATTGTACAGGCTGATGAAAGGGGATTGCCAGCAGATTGCAATGCAGAT
ATCCTGCTTTCAGGACATTGCCTCACATGGATGTTTTAGCCTAGGGATGATTGCTAGATTTGAGCTTGTGCTACATGAGA
AAGGCGAATGGATGTATCCACGTTTGTTTTGGGAGACTGGTGTTCTTGGTCAAGTTCTTTACCTTGAGGCCCATGCTGTT
GGAATATCTGCGACAGGGATTGGTTGCTACTTTGATGATGCTGTTCATGAGGTACTTGGCTTAAAAGACTTGGAGTTCCA
AAGCCTGTATCATTTTACAGTGGGTGCACCTGTACTTGACAAGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis