Browse Element(s) Details


OsAffx.18322.2.S1_s_at

Description gb:NM_195944.1
DB_XREF= gi:37533247
TID=OsAffx.18322.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0023M11.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2104011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21000Os.7485.1.S1_at11/1110+10306061..10310495nucleoside phosphatase family protein, putative, expressed
LOC_Os10g21009NANA10+10313759..10314243NA
LOC_Os10g21020OsAffx.6713.2.S1_s_at11/1110+10321963..10323633UMUC-like DNA repair family protein, putative
LOC_Os10g21020OsAffx.6713.2.S1_at10/1110+10321963..10323633UMUC-like DNA repair family protein, putative
LOC_Os10g21020OsAffx.6713.1.S1_at7/1110+10321963..10323633UMUC-like DNA repair family protein, putative
LOC_Os10g21040OsAffx.18322.2.S1_s_at11/1110+10327491..10328812hypothetical protein
LOC_Os10g21040OsAffx.18322.3.A1_at8/1110+10327491..10328812hypothetical protein
LOC_Os10g21050OsAffx.18322.1.S1_s_at11/1110+10331047..10332083Cytochrome P450 family protein, expressed
LOC_Os10g21050OsAffx.28081.1.S1_x_at1/1110+10331047..10332083Cytochrome P450 family protein, expressed
LOC_Os10g21050OsAffx.20024.1.S1_x_at1/1110+10331047..10332083Cytochrome P450 family protein, expressed
LOC_Os10g21060NANA10+10333352..10334840hypothetical protein
LOC_Os10g21070Os.46697.1.S1_at11/1110+10335538..10344589retrotransposon protein, putative, unclassified, expressed
LOC_Os10g21070Os.54169.1.S1_at1/1110+10335538..10344589retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18322.2.S1_s_at--462--5571Chr10:10328314..10328338 (25 bp)
GAAAGTTCCGGCCACGGCGATTGAT
LOC_Os10g21040
OsAffx.18322.2.S1_s_at--909--8371Chr10:10328329..10328353 (25 bp)
GGCGATTGATCCCACCAACGAGAAA
LOC_Os10g21040
OsAffx.18322.2.S1_s_at--490--6171Chr10:10328359..10328383 (25 bp)
GAGGACTAAGATGGTGCGCTACACT
LOC_Os10g21040
OsAffx.18322.2.S1_s_at--664--7291Chr10:10328372..10328396 (25 bp)
GTGCGCTACACTCAAGACCAAATTC
LOC_Os10g21040
OsAffx.18322.2.S1_s_at--960--3131Chr10:10328392..10328416 (25 bp)
AATTCAGTACTGCTTTGCGAACTCG
LOC_Os10g21040
OsAffx.18322.2.S1_s_at--294--2551Chr10:10328411..10328435 (25 bp)
AACTCGGTGGAGTTATCTGACGACG
LOC_Os10g21040
OsAffx.18322.2.S1_s_at--333--5791Chr10:10328432..10328456 (25 bp)
GACGACGAGGACGATTTTAAGCTGA
LOC_Os10g21040
OsAffx.18322.2.S1_s_at--638--9571Chr10:10328479..10328503 (25 bp)
TCTTGGCCGGATGTCGCAGGAGTAT
LOC_Os10g21040
OsAffx.18322.2.S1_s_at--1155--6631Chr10:10328512..10328536 (25 bp)
GTTGTATGCCATGGAAATCGCTGAA
LOC_Os10g21040
OsAffx.18322.2.S1_s_at--900--951Chr10:10328622..10328646 (25 bp)
AGGACGTCCTTAAGCAGTACCACAC
LOC_Os10g21040
OsAffx.18322.2.S1_s_at--930--6971Chr10:10328638..10328662 (25 bp)
GTACCACACCAAAGGCTATGCTGAG
LOC_Os10g21040
Target Sequence 
GAAAGTTCCGGCCACGGCGATTGATCCCACCAACGAGAAAAAAAAGAGGACTAAGATGGTGCGCTACACTCAAGACCAAA
TTCAGTACTGCTTTGCGAACTCGGTGGAGTTATCTGACGACGACGAGGACGATTTTAAGCTGACGGAGGTGCTGAGCAAG
GAGTGTCTTGGCCGGATGTCGCAGGAGTATCTAGCCAAGTTGTATGCCATGGAAATCGCTGAAGAGAAGGAGAAGGCTAA
TCTGAAGAAGATACAGGACGTCCTCCGCAATGAACGAGAGAACATCTTCAACATCCGTGAAAAACCCGAGGACGTCCTTA
AGCAGTACCACACCAAAGGCTATGCTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18322.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis