Browse Element(s) Details


OsAffx.6713.1.S1_at

Description gb:NM_195943.1
DB_XREF= gi:37533245
TID=OsAffx.6713.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0023M11.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g210207/11UMUC-like DNA repair family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20990OsAffx.28576.1.S1_x_at11/1110+10294530..10298861Ribosomal protein S12 containing protein
LOC_Os10g20990OsAffx.28576.3.S1_at11/1110+10294530..10298861Ribosomal protein S12 containing protein
LOC_Os10g20990OsAffx.28576.2.S1_x_at10/1110+10294530..10298861Ribosomal protein S12 containing protein
LOC_Os10g20990Os.26532.2.S1_x_at2/1110+10294530..10298861Ribosomal protein S12 containing protein
LOC_Os10g20990OsAffx.25312.1.S1_at1/1110+10294530..10298861Ribosomal protein S12 containing protein
LOC_Os10g20990Os.57454.1.S1_x_at1/1110+10294530..10298861Ribosomal protein S12 containing protein
LOC_Os10g21000Os.7485.1.S1_at11/1110+10306061..10310495nucleoside phosphatase family protein, putative, expressed
LOC_Os10g21009NANA10+10313759..10314243NA
LOC_Os10g21020OsAffx.6713.2.S1_s_at11/1110+10321963..10323633UMUC-like DNA repair family protein, putative
LOC_Os10g21020OsAffx.6713.2.S1_at10/1110+10321963..10323633UMUC-like DNA repair family protein, putative
LOC_Os10g21020OsAffx.6713.1.S1_at7/1110+10321963..10323633UMUC-like DNA repair family protein, putative
LOC_Os10g21040OsAffx.18322.2.S1_s_at11/1110+10327491..10328812hypothetical protein
LOC_Os10g21040OsAffx.18322.3.A1_at8/1110+10327491..10328812hypothetical protein
LOC_Os10g21050OsAffx.18322.1.S1_s_at11/1110+10331047..10332083Cytochrome P450 family protein, expressed
LOC_Os10g21050OsAffx.28081.1.S1_x_at1/1110+10331047..10332083Cytochrome P450 family protein, expressed
LOC_Os10g21050OsAffx.20024.1.S1_x_at1/1110+10331047..10332083Cytochrome P450 family protein, expressed
LOC_Os10g21060NANA10+10333352..10334840hypothetical protein
LOC_Os10g21070Os.46697.1.S1_at11/1110+10335538..10344589retrotransposon protein, putative, unclassified, expressed
LOC_Os10g21070Os.54169.1.S1_at1/1110+10335538..10344589retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6713.1.S1_at--608--3331Chr10:10322784..10323219 (25 bp)
CACTCCAAGCTCGTTAGGTTCTATT
LOC_Os10g21020
OsAffx.6713.1.S1_at--1015--7871Chr10:10322768..10322792 (25 bp)
GGTTCTATTCGAGAATGGGTTTCAA
LOC_Os10g21020
OsAffx.6713.1.S1_at--986--3451Chr10:10322741..10322765 (25 bp)
CAGTGCATGAGGTAGACGGATCTTC
LOC_Os10g21020
OsAffx.6713.1.S1_at--1130--7951Chr10:10322724..10322748 (25 bp)
GGATCTTCAATGATTGATCTTGCTC
LOC_Os10g21020
OsAffx.6713.1.S1_at--1143--6411Chr10:10322709..10322733 (25 bp)
GATCTTGCTCACATGTTAGTCTGGG
LOC_Os10g21020
OsAffx.6713.1.S1_at--1068--7971Chr10:10322665..10322689 (25 bp)
GGATGCTGACATTGAACAGCTTCTT
LOC_Os10g21020
OsAffx.6713.1.S1_at--438--2151Chr10:10322650..10322674 (25 bp)
ACAGCTTCTTATCAAATGGAGCAAG
LOC_Os10g21020
OsAffx.6713.1.S1_at--271--8551NONE
TGGAGCAAGAGCGACGCTCCGACGC
NONE
OsAffx.6713.1.S1_at--766--4271Chr10:10318939..10318963 (25 bp)
CCTGAGCCCGACAGTGTGCCGGTGA
NONE
OsAffx.6713.1.S1_at--104--5011Chr10:10318801..10318825 (25 bp)
GCATGGTCAGGGTCGGACGCTCATC
NONE
OsAffx.6713.1.S1_at--693--5651Chr10:10318642..10318666 (25 bp)
GACAGGTCGTCGTCACGCGATCCCG
NONE
Target Sequence 
CACTCCAAGCTCGTTAGGTTCTATTCGAGAATGGGTTTCAAAACAGTGCATGAGGTAGACGGATCTTCAATGATTGATCT
TGCTCACATGTTAGTCTGGGGAGGTAGGGGCACAAGAATGGATGCTGACATTGAACAGCTTCTTATCAAATGGAGCAAGA
GCGACGCTCCGACGCGCTGCCGCATCCCCGTCTGGTTCCGCCACGAGGAGGGGTCGAGGCCTGAGCCCGACAGTGTGCCG
GTGAGGCATGAGCCCGACAGTGTGTCGGAGTTGCGGCGGTGGATGAGGCGAGGGCGGGGCTGCCGCGCCGCAGTGGAACA
GAGAGGAGGCGCCGCATGGTCAGGGTCGGACGCTCATCCCGCGGTGGCTGCCGATCCCGCTGCCAGGTCATCGTCGTCGC
GCGATCCTGGCTGCTCCTCTGTCGCAACCCTACCGGCTCCTTCCCTGCGCCGCCGCGACCGCCTCGGTGGTGCCACGCGA
GTCCATCCCGCCGACAGGTCGTCGTCACGCGATCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6713.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis