Browse Element(s) Details


Os.7485.1.S1_at

Description gb:AK070298.1
DB_XREF= gi:32980322
TID=Os.7485.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7485 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative nucleosid phosphatase (OSJNAb0078C13.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050G19, full insert sequence.
FL= gb:AK070298.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2100011/11nucleoside phosphatase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20960OsAffx.20488.2.S1_at11/1110+10274779..10282409retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20970OsAffx.7362.1.S1_x_at1/1110+10283282..10288080transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20970Os.46314.3.S1_at1/1110+10283282..10288080transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20980OsAffx.23366.1.S1_at1/1110+10290691..10294177transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20980OsAffx.23366.2.S1_s_at1/1110+10290691..10294177transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20990OsAffx.28576.1.S1_x_at11/1110+10294530..10298861Ribosomal protein S12 containing protein
LOC_Os10g20990OsAffx.28576.3.S1_at11/1110+10294530..10298861Ribosomal protein S12 containing protein
LOC_Os10g20990OsAffx.28576.2.S1_x_at10/1110+10294530..10298861Ribosomal protein S12 containing protein
LOC_Os10g20990Os.26532.2.S1_x_at2/1110+10294530..10298861Ribosomal protein S12 containing protein
LOC_Os10g20990OsAffx.25312.1.S1_at1/1110+10294530..10298861Ribosomal protein S12 containing protein
LOC_Os10g20990Os.57454.1.S1_x_at1/1110+10294530..10298861Ribosomal protein S12 containing protein
LOC_Os10g21000Os.7485.1.S1_at11/1110+10306061..10310495nucleoside phosphatase family protein, putative, expressed
LOC_Os10g21009NANA10+10313759..10314243NA
LOC_Os10g21020OsAffx.6713.2.S1_s_at11/1110+10321963..10323633UMUC-like DNA repair family protein, putative
LOC_Os10g21020OsAffx.6713.2.S1_at10/1110+10321963..10323633UMUC-like DNA repair family protein, putative
LOC_Os10g21020OsAffx.6713.1.S1_at7/1110+10321963..10323633UMUC-like DNA repair family protein, putative
LOC_Os10g21040OsAffx.18322.2.S1_s_at11/1110+10327491..10328812hypothetical protein
LOC_Os10g21040OsAffx.18322.3.A1_at8/1110+10327491..10328812hypothetical protein
LOC_Os10g21050OsAffx.18322.1.S1_s_at11/1110+10331047..10332083Cytochrome P450 family protein, expressed
LOC_Os10g21050OsAffx.28081.1.S1_x_at1/1110+10331047..10332083Cytochrome P450 family protein, expressed
LOC_Os10g21050OsAffx.20024.1.S1_x_at1/1110+10331047..10332083Cytochrome P450 family protein, expressed
LOC_Os10g21060NANA10+10333352..10334840hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7485.1.S1_at--81--1291Chr10:10306637..10306661 (25 bp)
AGATCTCACTTCGTCACTAGCCGAT
LOC_Os10g21000
Os.7485.1.S1_at--509--9991Chr10:10306620..10306644 (25 bp)
TAGCCGATCTTCATCTTCCAAAGGT
LOC_Os10g21000
Os.7485.1.S1_at--613--311Chr10:10306557..10306581 (25 bp)
ATACCATCCCATAACAAACCTTGTG
LOC_Os10g21000
Os.7485.1.S1_at--565--4791Chr10:10306523..10306547 (25 bp)
GCTCCGGACTATTTGATTTCTTCTC
LOC_Os10g21000
Os.7485.1.S1_at--952--6151Chr10:10306434..10306458 (25 bp)
GAGGTATGACTTGGTGCCTGCTGCC
LOC_Os10g21000
Os.7485.1.S1_at--435--9111Chr10:10306416..10306440 (25 bp)
TGCTGCCTAGTCCTGGGCATGATAT
LOC_Os10g21000
Os.7485.1.S1_at--76--3711Chr10:10306279..10306303 (25 bp)
CTAGCCCCAAAATGTCACTGTTTCT
LOC_Os10g21000
Os.7485.1.S1_at--101--6511Chr10:10306247..10306271 (25 bp)
GATATCAATTCAACCGAGCAGGCTG
LOC_Os10g21000
Os.7485.1.S1_at--796--5931Chr10:10306232..10306256 (25 bp)
GAGCAGGCTGTGTACTTCAAATGTT
LOC_Os10g21000
Os.7485.1.S1_at--615--5631Chr10:10306134..10306158 (25 bp)
GACACCATGTAAGAGTTTTCCCTTG
LOC_Os10g21000
Os.7485.1.S1_at--375--91Chr10:10306066..10306090 (25 bp)
ATTCCAGTGCTCTTATGTTTACTCA
LOC_Os10g21000
Target Sequence 
AGATCTCACTTCGTCACTAGCCGATCTTCATCTTCCAAAGGTGTAGCCTTACATTTCAGAATGACATGACTAGTATGAGA
ATACCATCCCATAACAAACCTTGTGTAAATAATAGCTCCGGACTATTTGATTTCTTCTCTAATCAAAANTNAAATTTTGT
CGGTATACTGACACTTCAGTGAGATCTAGCATTCACAGAATTGGAGGTATGACTTGGTGCCTGCTGCCTAGTCCTGGGCA
TGATATTTTCATTACGATGTATGCGCAACAGTACATGTCACAAGGTGAAATTGCAAGAAGAAATTTATATGGTTCACCAA
AGTGGTTGGCCGTGGGCTGGAGGTATATAAATCAGCTCCTAGCCCCAAAATGTCACTGTTTCTAAATTGTGATATCAATT
CAACCGAGCAGGCTGTGTACTTCAAATGTTTCTTATTCTTTTGTTCTACAACATAATAAAGCTGCCTATGGGCTATGGTC
TTGTGTCTGTAGAATTGCTGTACGACACCATGTAAGAGTTTTCCCTTGTGGAAGGACATTTGGTACCAACAGAAAACATG
AANNATTAGTAATTCCAGTGCTCTTATGTTTACTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7485.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis