Browse Element(s) Details


OsAffx.28576.3.S1_at

Description tigr:9638.m01745
TID=OsAffx.28576.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ribosomal protein S12, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2099011/11Ribosomal protein S12 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20940NANA10+10270713..10272248retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20950OsAffx.248.1.S1_x_at2/1110+10273101..10273409hypothetical protein
LOC_Os10g20960OsAffx.20488.2.S1_at11/1110+10274779..10282409retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20970OsAffx.7362.1.S1_x_at1/1110+10283282..10288080transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20970Os.46314.3.S1_at1/1110+10283282..10288080transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20980OsAffx.23366.1.S1_at1/1110+10290691..10294177transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20980OsAffx.23366.2.S1_s_at1/1110+10290691..10294177transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20990OsAffx.28576.1.S1_x_at11/1110+10294530..10298861Ribosomal protein S12 containing protein
LOC_Os10g20990OsAffx.28576.3.S1_at11/1110+10294530..10298861Ribosomal protein S12 containing protein
LOC_Os10g20990OsAffx.28576.2.S1_x_at10/1110+10294530..10298861Ribosomal protein S12 containing protein
LOC_Os10g20990Os.26532.2.S1_x_at2/1110+10294530..10298861Ribosomal protein S12 containing protein
LOC_Os10g20990OsAffx.25312.1.S1_at1/1110+10294530..10298861Ribosomal protein S12 containing protein
LOC_Os10g20990Os.57454.1.S1_x_at1/1110+10294530..10298861Ribosomal protein S12 containing protein
LOC_Os10g21000Os.7485.1.S1_at11/1110+10306061..10310495nucleoside phosphatase family protein, putative, expressed
LOC_Os10g21009NANA10+10313759..10314243NA
LOC_Os10g21020OsAffx.6713.2.S1_s_at11/1110+10321963..10323633UMUC-like DNA repair family protein, putative
LOC_Os10g21020OsAffx.6713.2.S1_at10/1110+10321963..10323633UMUC-like DNA repair family protein, putative
LOC_Os10g21020OsAffx.6713.1.S1_at7/1110+10321963..10323633UMUC-like DNA repair family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28576.3.S1_at--225--7851Chr10:10295106..10295130 (25 bp)
GGTACGTCATCCTTGGTTGCCTCGC
LOC_Os10g20990
OsAffx.28576.3.S1_at--985--6991Chr10:10295105..10295129 (25 bp)
GTACGTCATCCTTGGTTGCCTCGCC
LOC_Os10g20990
OsAffx.28576.3.S1_at--881--8572Chr11:23323413..23323432 (20 bp)
TGGTTGCCTCGCCTCGTCAAGGAGA
NONE
OsAffx.28576.3.S1_at--953--7892Chr11:23323413..23323433 (21 bp)
GGTTGCCTCGCCTCGTCAAGGAGAA
NONE
OsAffx.28576.3.S1_at--273--6692Chr11:23323413..23323434 (22 bp)
GTTGCCTCGCCTCGTCAAGGAGAAC
NONE
OsAffx.28576.3.S1_at--18--10692Chr11:23323413..23323434 (22 bp)
TTGCCTCGCCTCGTCAAGGAGAACG
NONE
OsAffx.28576.3.S1_at--90--3331Chr10:10295057..10295081 (25 bp)
CACTGGAGTAGGGTCGCCAGGATCA
LOC_Os10g20990
OsAffx.28576.3.S1_at--695--7251Chr10:10294571..10294595 (25 bp)
GTCCGGTCCGCTTGCGAAAAGAAGA
LOC_Os10g20990
OsAffx.28576.3.S1_at--765--9271Chr10:10294570..10294594 (25 bp)
TCCGGTCCGCTTGCGAAAAGAAGAA
LOC_Os10g20990
OsAffx.28576.3.S1_at--777--7791Chr10:10294567..10294591 (25 bp)
GGTCCGCTTGCGAAAAGAAGAATCG
LOC_Os10g20990
OsAffx.28576.3.S1_at--1077--4891Chr10:10294562..10294586 (25 bp)
GCTTGCGAAAAGAAGAATCGGCCGC
LOC_Os10g20990
Target Sequence 
GGTACGTCATCCTTGGTTGCCTCGCCTCGTCAAGGAGAACGGCTTCCGCCACTGGAGTAGGGTCGCCAGGATCATGCCAC
GCCGCTCTGCAAGGTTGTGCCGTGACAGGTGGTGCCACCACCTCGCCCGCGACGTCTACCACCGCCCCTTCACTGCCCGT
GACGACGACGAGCTCCTACGCCTCCACTACCGCCTGGGCGACTGCTGGAAGAAGATTGGCCACGCTGTCTACGGCCGGAC
CTCGCGAGTCATGAATCACCGCTGGAGGGAGCTCCGGCGCAGCGGCTTCCTCGCTGCTGCTGCAAGGACGGAGCAGAAGC
TCGACATGGCGGACGATATGGTGGAAAGCGAAGTGGAGGAATCAGATCAGTCGCTGCCCACTACTAGGAAAAGCATTATC
GCAACCGGCCGAAAAGGGTCTTTGCAGGCGGGGCAGCCGTCCGCCTGTAAGCCAACGACTGTGAAGATCGCCGATCTTCG
CAGGCGGGGCGGCCGTCCGCCTGCGAAGATAATTTTCGCAGGCGGACGTTGGCTAGTCCGGTCCGCTTGCGAAAAGAAGA
ATCGGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28576.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis