Browse Element(s) Details


OsAffx.18335.1.S1_at

Description tigr:9638.m01812
TID=OsAffx.18335.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2163010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21590Os.49317.1.S1_at11/1110+10721702..10726366mannitol transporter, putative, expressed
LOC_Os10g21590Os.27138.1.S1_at11/1110+10721702..10726366mannitol transporter, putative, expressed
LOC_Os10g21600OsAffx.30482.1.S1_at10/1110+10727187..10728539hypothetical protein
LOC_Os10g21620NANA10+10742995..10743578hypothetical protein
LOC_Os10g21630OsAffx.18335.1.S1_at10/1110+10746408..10747140expressed protein
LOC_Os10g21640NANA10+10752819..10753211hypothetical protein
LOC_Os10g21660Os.46572.1.S1_at11/1110+10756636..10766649expressed protein
LOC_Os10g21660OsAffx.8227.1.S1_s_at10/1110+10756636..10766649expressed protein
LOC_Os10g21660OsAffx.8227.1.S1_at9/1110+10756636..10766649expressed protein
LOC_Os10g21660OsAffx.8227.2.S1_at1/1110+10756636..10766649expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18335.1.S1_at--1093--6671NONE
GTTGCGCCGGCCACAGATGCAGCCA
NONE
OsAffx.18335.1.S1_at--845--1691Chr10:10746490..10746514 (25 bp)
AGCCACAGATCCAAGGTGTCCACCA
LOC_Os10g21630
OsAffx.18335.1.S1_at--67--1291Chr10:10746484..10746508 (25 bp)
AGATCCAAGGTGTCCACCATGTAAA
LOC_Os10g21630
OsAffx.18335.1.S1_at--160--1031Chr10:10746477..10746501 (25 bp)
AGGTGTCCACCATGTAAATGCTGCA
LOC_Os10g21630
OsAffx.18335.1.S1_at--1095--7451Chr10:10746475..10746499 (25 bp)
GTGTCCACCATGTAAATGCTGCAAA
LOC_Os10g21630
OsAffx.18335.1.S1_at--423--7271Chr10:10746473..10746497 (25 bp)
GTCCACCATGTAAATGCTGCAAATG
LOC_Os10g21630
OsAffx.18335.1.S1_at--899--751Chr10:10746466..10746490 (25 bp)
ATGTAAATGCTGCAAATGCGGCTGC
LOC_Os10g21630
OsAffx.18335.1.S1_at--566--611Chr10:10746451..10746475 (25 bp)
ATGCGGCTGCAGAGTCTGACTACCC
LOC_Os10g21630
OsAffx.18335.1.S1_at--972--8331Chr10:10746447..10746471 (25 bp)
GGCTGCAGAGTCTGACTACCCTCGT
LOC_Os10g21630
OsAffx.18335.1.S1_at--388--5031Chr10:10746443..10746467 (25 bp)
GCAGAGTCTGACTACCCTCGTTCCA
LOC_Os10g21630
OsAffx.18335.1.S1_at--498--7071Chr10:10746438..10746462 (25 bp)
GTCTGACTACCCTCGTTCCACTTTT
LOC_Os10g21630
Target Sequence 
GTTGCGCCGGCCACAGATGCAGCCACAGATCCAAGGTGTCCACCATGTAAATGCTGCAAATGCGGCTGCAGAGTCTGACT
ACCCTCGTTCCACTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18335.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis