Browse Element(s) Details


OsAffx.18362.1.S1_at

Description tigr:9638.m01984
TID=OsAffx.18362.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2330011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23280OsAffx.30516.1.S1_at11/1110+11818655..11819604hypothetical protein
LOC_Os10g23280OsAffx.19669.1.S1_at1/1110+11818655..11819604hypothetical protein
LOC_Os10g23290Os.47463.1.S1_x_at6/1110+11823153..11832831transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g23290Os.14491.2.S1_x_at5/1110+11823153..11832831transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g23300OsAffx.18362.1.S1_at11/1110+11843927..11844995hypothetical protein
LOC_Os10g23310Os.46341.1.S1_at2/1110+11849955..11851661Transferase family protein, expressed
LOC_Os10g23320OsAffx.18363.1.S1_at11/1110+11859517..11859979hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18362.1.S1_at--1045--8871Chr10:11844254..11844276 (23 bp)
TGAGGCGGACCTCAAGCTATCGACC
LOC_Os10g23300
OsAffx.18362.1.S1_at--35--5811Chr10:11844247..11844271 (25 bp)
GACCTCAAGCTATCGACCTACAAAA
LOC_Os10g23300
OsAffx.18362.1.S1_at--145--1551Chr10:11844240..11844264 (25 bp)
AGCTATCGACCTACAAAAATTGGTT
LOC_Os10g23300
OsAffx.18362.1.S1_at--1100--7871Chr10:11844219..11844243 (25 bp)
GGTTATGGCATTTAAATAGACGCAA
LOC_Os10g23300
OsAffx.18362.1.S1_at--708--2031Chr10:11844177..11844201 (25 bp)
ACATATTTCTAAGTTACAGCTCCCC
LOC_Os10g23300
OsAffx.18362.1.S1_at--1030--10151Chr10:11844120..11844144 (25 bp)
TTTCCTCTCCCTCAGATTCGAAGGG
LOC_Os10g23300
OsAffx.18362.1.S1_at--1091--9491Chr10:11844115..11844139 (25 bp)
TCTCCCTCAGATTCGAAGGGCGGTG
LOC_Os10g23300
OsAffx.18362.1.S1_at--1002--2871Chr10:11844073..11844097 (25 bp)
AAGGGAGTTACAGCGGCGCTCCGAC
LOC_Os10g23300
OsAffx.18362.1.S1_at--193--9291Chr10:11844054..11844078 (25 bp)
TCCGACGGCGACGTACAGGGACAGT
LOC_Os10g23300
OsAffx.18362.1.S1_at--112--9871Chr10:11844041..11844065 (25 bp)
TACAGGGACAGTGAATCCGGCGACG
LOC_Os10g23300
OsAffx.18362.1.S1_at--45--3831Chr10:11843967..11843991 (25 bp)
CTGCTCGTACTGCTCCAACTTGGAG
LOC_Os10g23300
Target Sequence 
TGAGGCGGACCTCAAGCTATCGACCTACAAAAATTGGTTATGGCATTTAAATAGACGCAAGAGTAAACTCAAACATAACA
TATTTCTAAGTTACAGCTCCCCCTCTCCTCTCCTCTCCTCTCCTCTCCCTCGGCTTTCCTCTCCCTCAGATTCGAAGGGC
GGTGCTAGTGGCGGTGGTGGGAAGGGAGTTACAGCGGCGCTCCGACGGCGACGTACAGGGACAGTGAATCCGGCGACGGT
GACGCGCGAGGGCGGTGGATCCGGCGACGGTGAGACGGGGGTGCACCCTGCTCGTACTGCTCCAACTTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18362.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis