Browse Element(s) Details


OsAffx.18472.1.S1_at

Description tigr:9638.m02700
TID=OsAffx.18472.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3128011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31240Os.46565.2.S1_x_at11/1110+16053967..16057134expressed protein
LOC_Os10g31250OsAffx.20295.1.S1_at11/1110+16059064..16064038expressed protein
LOC_Os10g31250OsAffx.28164.2.S1_at2/1110+16059064..16064038expressed protein
LOC_Os10g31250Os.52574.2.S1_x_at1/1110+16059064..16064038expressed protein
LOC_Os10g31280OsAffx.18472.1.S1_at11/1110+16077908..16078688hypothetical protein
LOC_Os10g31290Os.46672.1.S1_at11/1110+16079569..16086346expressed protein
LOC_Os10g31300OsAffx.27523.2.S1_at11/1110+16088727..16090054hypothetical protein
LOC_Os10g31310OsAffx.27523.3.S1_x_at11/1110+16093294..16094269transposon protein, putative, unclassified
LOC_Os10g31310OsAffx.27523.3.S1_at11/1110+16093294..16094269transposon protein, putative, unclassified
LOC_Os10g31310OsAffx.27523.4.S1_at3/1110+16093294..16094269transposon protein, putative, unclassified
LOC_Os10g31320Os.51176.1.S1_at11/1110+16096614..16097539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31320Os.11040.1.S1_x_at10/1110+16096614..16097539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31330Os.51848.1.S1_x_at11/1110+16099462..16100539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31330Os.51929.1.S1_at9/1110+16099462..16100539transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18472.1.S1_at--340--8651Chr10:16078428..16078452 (25 bp)
TGGGCGCGACATTCAACCTCCTGTA
LOC_Os10g31280
OsAffx.18472.1.S1_at--841--2051Chr10:16078436..16078460 (25 bp)
ACATTCAACCTCCTGTAGTCCCATG
LOC_Os10g31280
OsAffx.18472.1.S1_at--768--6311Chr10:16078469..16078493 (25 bp)
GATGACTACCATATTCAACCTCCTG
LOC_Os10g31280
OsAffx.18472.1.S1_at--515--2811Chr10:16078494..16078518 (25 bp)
AAGATAATCCCGTGCTTGTACGGTT
LOC_Os10g31280
OsAffx.18472.1.S1_at--286--551Chr10:16078500..16078524 (25 bp)
ATCCCGTGCTTGTACGGTTACCAGA
LOC_Os10g31280
OsAffx.18472.1.S1_at--161--8751Chr10:16078510..16078534 (25 bp)
TGTACGGTTACCAGAGCAAATCTCC
LOC_Os10g31280
OsAffx.18472.1.S1_at--475--371Chr10:16078537..16078561 (25 bp)
ATCAAATCCGGCAGAATTTTTCTCG
LOC_Os10g31280
OsAffx.18472.1.S1_at--998--5031Chr10:16078547..16078571 (25 bp)
GCAGAATTTTTCTCGATCAGCCAAA
LOC_Os10g31280
OsAffx.18472.1.S1_at--130--6432Chr10:16078561..16078585 (25 bp)
GATCAGCCAAAATTGGTCAAGGGTT
LOC_Os10g31280
OsAffx.18472.1.S1_at--144--2891Chr10:16078579..16078603 (25 bp)
AAGGGTTTTTGATTCACTTGATCTA
LOC_Os10g31280
OsAffx.18472.1.S1_at--1096--9671Chr10:16078592..16078616 (25 bp)
TCACTTGATCTACTCTTTCCATTTT
LOC_Os10g31280
Target Sequence 
TGGGCGCGACATTCAACCTCCTGTAGTCCCATGCCGGGGAAGATGACTACCATATTCAACCTCCTGAAGATAATCCCGTG
CTTGTACGGTTACCAGAGCAAATCTCCCCATCAAATCCGGCAGAATTTTTCTCGATCAGCCAAAATTGGTCAAGGGTTTT
TGATTCACTTGATCTACTCTTTCCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18472.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis