Browse Element(s) Details


OsAffx.18477.1.S1_at

Description gb:NM_196793.1
DB_XREF= gi:37534945
TID=OsAffx.18477.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0039C14.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3155011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31490NANA10+16168531..16169088transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31500OsAffx.121.1.S1_s_at11/1110+16171271..16172350transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31510OsAffx.6829.1.S1_at11/1110+16178272..16178850hypothetical protein
LOC_Os10g31520Os.13981.1.S1_at11/1110+16179695..16183455Ribosomal RNA assembly protein mis3, putative, expressed
LOC_Os10g31530Os.18711.1.S1_at11/1110+16186452..16187321expressed protein
LOC_Os10g31540OsAffx.18476.1.S1_at11/1110+16189643..16190224expressed protein
LOC_Os10g31550OsAffx.18477.1.S1_at11/1110+16193108..16193527hypothetical protein
LOC_Os10g31550Os.53910.1.S1_at1/1110+16193108..16193527hypothetical protein
LOC_Os10g31560Os.46670.1.S1_at11/1110+16201593..16202162expressed protein
LOC_Os10g31570OsAffx.30627.1.S1_at11/1110+16208344..16208952expressed protein
LOC_Os10g31580NANA10+16215141..16216544retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18477.1.S1_at--476--10711Chr10:16193445..16193469 (25 bp)
TTGCGACCTCTCTAGCGGGCATGTT
LOC_Os10g31550
OsAffx.18477.1.S1_at--1133--9991Chr10:16193433..16193457 (25 bp)
TAGCGGGCATGTTCCCTGCTAGCTA
LOC_Os10g31550
OsAffx.18477.1.S1_at--120--8931Chr10:16193394..16193418 (25 bp)
TGACCACCGTCATCCTAATATGTGA
LOC_Os10g31550
OsAffx.18477.1.S1_at--19--8971Chr10:16193372..16193396 (25 bp)
TGACAAAGTCACCTACACAACGCAC
LOC_Os10g31550
OsAffx.18477.1.S1_at--281--7191Chr10:16193319..16193343 (25 bp)
GTCGGCCAATGACCACTTGCACCAA
LOC_Os10g31550
OsAffx.18477.1.S1_at--28--10751Chr10:16193303..16193327 (25 bp)
TTGCACCAACGCAGTCTATGCCATC
LOC_Os10g31550
OsAffx.18477.1.S1_at--502--511Chr10:16193281..16193305 (25 bp)
ATCGTCACCTCTGCAATCGTGGACA
LOC_Os10g31550
OsAffx.18477.1.S1_at--89--1691Chr10:16193257..16193281 (25 bp)
AGCCTCACTATCATCAGATTTGTTT
LOC_Os10g31550
OsAffx.18477.1.S1_at--735--5551Chr10:16193229..16193253 (25 bp)
GAAATGCCGAATTTGGCCTTGGGAA
LOC_Os10g31550
OsAffx.18477.1.S1_at--128--4431Chr10:16193214..16193238 (25 bp)
GCCTTGGGAAAGCAGCTCCAGCTAT
LOC_Os10g31550
OsAffx.18477.1.S1_at--899--851Chr10:16193166..16193190 (25 bp)
ATGGCTACCTTCATTGCGAGCTAGC
LOC_Os10g31550
Target Sequence 
TTGCGACCTCTCTAGCGGGCATGTTCCCTGCTAGCTACCTTGAGCCCCGCCTGACCACCGTCATCCTAATATGTGACAAA
GTCACCTACACAACGCACCCTGGGCTGGCACATACGCCAGTGCCTCGTCGGCCAATGACCACTTGCACCAACGCAGTCTA
TGCCATCGTCACCTCTGCAATCGTGGACAGCCTCACTATCATCAGATTTGTTTGGGGAAATGCCGAATTTGGCCTTGGGA
AAGCAGCTCCAGCTATCCCCTATGCCTTTCGCCTCTGCCATGGCTACCTTCATTGCGAGCTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18477.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis