Browse Element(s) Details


OsAffx.18485.3.S1_at

Description tigr:9638.m02782
TID=OsAffx.18485.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3208011/11Exostosin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32030OsAffx.30631.1.S1_at11/1110+16497198..16502018AT hook motif-containing protein, putative
LOC_Os10g32040OsAffx.20283.1.S1_at10/1110+16505082..16506294hypothetical protein
LOC_Os10g32050OsAffx.30632.1.S1_at11/1110+16506527..16507545hypothetical protein
LOC_Os10g32060Os.4071.2.S1_x_at11/1110+16510636..16516402retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g32070OsAffx.20281.1.S1_at11/1110+16518014..16519760GATA zinc finger family protein
LOC_Os10g32080OsAffx.18485.3.S1_at11/1110+16522643..16524163Exostosin family protein
LOC_Os10g32090OsAffx.30633.1.S1_at11/1110+16524730..16525308hypothetical protein
LOC_Os10g32100NANA10+16527337..16527957hypothetical protein
LOC_Os10g32110OsAffx.8050.1.S1_at11/1110+16532458..16533864Exostosin family protein, expressed
LOC_Os10g32110OsAffx.8050.1.S1_x_at11/1110+16532458..16533864Exostosin family protein, expressed
LOC_Os10g32110Os.46796.2.S1_x_at1/1110+16532458..16533864Exostosin family protein, expressed
LOC_Os10g32124OsAffx.32166.1218.S1_x_at10/1110+16544822..16553037retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18485.3.S1_at--868--3931Chr10:16523016..16523040 (25 bp)
CGGCGTACACCCAGTACACGTGGCA
LOC_Os10g32080
OsAffx.18485.3.S1_at--994--8492Chr10:16522996..16523020 (25 bp)
TGGCACCTGCCGAGGGACTACCGGA
LOC_Os10g32080
OsAffx.18485.3.S1_at--302--9171Chr10:16522989..16523013 (25 bp)
TGCCGAGGGACTACCGGAGCTACTC
LOC_Os10g32080
OsAffx.18485.3.S1_at--272--2031Chr10:16522980..16523004 (25 bp)
ACTACCGGAGCTACTCGGTGTTCGT
LOC_Os10g32080
OsAffx.18485.3.S1_at--216--1051Chr10:16522860..16522884 (25 bp)
AGGTGATCCGGCTGATCCCGAGGAT
LOC_Os10g32080
OsAffx.18485.3.S1_at--659--8691Chr10:16522848..16522872 (25 bp)
TGATCCCGAGGATCACGTACAGGGA
LOC_Os10g32080
OsAffx.18485.3.S1_at--236--911Chr10:16522840..16522864 (25 bp)
AGGATCACGTACAGGGACCCCGCGG
LOC_Os10g32080
OsAffx.18485.3.S1_at--156--4691Chr10:16522811..16522835 (25 bp)
GCTGGTGACGTTCCGGGACGCGTTC
LOC_Os10g32080
OsAffx.18485.3.S1_at--945--5751Chr10:16522702..16522726 (25 bp)
GACGGGCACGACAGCTGGAAGCACA
LOC_Os10g32080
OsAffx.18485.3.S1_at--74--1631Chr10:16522690..16522714 (25 bp)
AGCTGGAAGCACAACCTGCTCGACG
LOC_Os10g32080
OsAffx.18485.3.S1_at--144--4811Chr10:16522673..16522697 (25 bp)
GCTCGACGACGGACAGACGCAGATC
LOC_Os10g32080
Target Sequence 
CGGCGTACACCCAGTACACGTGGCACCTGCCGAGGGACTACCGGAGCTACTCGGTGTTCGTCCCCCACACCGACGTCGTC
GCCGGCGGCCGGAACGCGAGCATCGAGGCGGCGCTGAGGAGGATCCCGGCGGCGACGGTGGCGAGGATGCGGGAGGAGGT
GATCCGGCTGATCCCGAGGATCACGTACAGGGACCCCGCGGCGACGCTGGTGACGTTCCGGGACGCGTTCGACGTCGCCG
TCGACGCCGTGCTCGACCGCGTGGCGAGGCGGCGGCGCGCCGCCGCCGAGGGGAGGGAGTACGTGGACGTGTTCGACGGG
CACGACAGCTGGAAGCACAACCTGCTCGACGACGGACAGACGCAGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18485.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis