Browse Element(s) Details


OsAffx.8050.1.S1_at

Description gb:NM_196847.1
DB_XREF= gi:37535053
TID=OsAffx.8050.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0011A08.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3211011/11Exostosin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32050OsAffx.30632.1.S1_at11/1110+16506527..16507545hypothetical protein
LOC_Os10g32060Os.4071.2.S1_x_at11/1110+16510636..16516402retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g32070OsAffx.20281.1.S1_at11/1110+16518014..16519760GATA zinc finger family protein
LOC_Os10g32080OsAffx.18485.3.S1_at11/1110+16522643..16524163Exostosin family protein
LOC_Os10g32090OsAffx.30633.1.S1_at11/1110+16524730..16525308hypothetical protein
LOC_Os10g32100NANA10+16527337..16527957hypothetical protein
LOC_Os10g32110OsAffx.8050.1.S1_at11/1110+16532458..16533864Exostosin family protein, expressed
LOC_Os10g32110OsAffx.8050.1.S1_x_at11/1110+16532458..16533864Exostosin family protein, expressed
LOC_Os10g32110Os.46796.2.S1_x_at1/1110+16532458..16533864Exostosin family protein, expressed
LOC_Os10g32124OsAffx.32166.1218.S1_x_at10/1110+16544822..16553037retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32140OsAffx.30634.1.S1_at2/1110+16556712..16557123hypothetical protein
LOC_Os10g32150OsAffx.18487.1.S1_x_at11/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32150OsAffx.18487.1.S1_at11/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32150Os.53480.1.S1_x_at5/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32150Os.56035.1.S1_at1/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32150Os.52587.2.S1_at1/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8050.1.S1_at--853--411Chr10:16532937..16532961 (25 bp)
ATCATCCGGCAGTGCGGCGCGTCGA
LOC_Os10g32110
OsAffx.8050.1.S1_at--8--4511Chr10:16532853..16532877 (25 bp)
GCCGTCATGCGCGTGTTCGAGAGCT
LOC_Os10g32110
OsAffx.8050.1.S1_at--1121--9611Chr10:16532849..16532873 (25 bp)
TCATGCGCGTGTTCGAGAGCTCCCG
LOC_Os10g32110
OsAffx.8050.1.S1_at--417--7631Chr10:16532804..16532828 (25 bp)
GGGACACCATGACGCGGCGCTCGAC
LOC_Os10g32110
OsAffx.8050.1.S1_at--118--7571Chr10:16532733..16532757 (25 bp)
GGGTCGGCCTACACCCAGTACACGC
LOC_Os10g32110
OsAffx.8050.1.S1_at--118--4711Chr10:16532690..16532714 (25 bp)
GCGGCGGGTGGTCGGTGCTCATCCC
LOC_Os10g32110
OsAffx.8050.1.S1_at--138--8931Chr10:16532654..16532678 (25 bp)
TGACCGGCCGGAACGTGAGCATCGA
LOC_Os10g32110
OsAffx.8050.1.S1_at--906--7431Chr10:16532553..16532577 (25 bp)
GTGTACGCCGACACGAGGTCGAGCC
LOC_Os10g32110
OsAffx.8050.1.S1_at--725--5631Chr10:16532544..16532568 (25 bp)
GACACGAGGTCGAGCCGCGTCGACT
LOC_Os10g32110
OsAffx.8050.1.S1_at--776--9371Chr10:16532535..16532559 (25 bp)
TCGAGCCGCGTCGACTTCAGGGACG
LOC_Os10g32110
OsAffx.8050.1.S1_at--242--4531Chr10:16532531..16532555 (25 bp)
GCCGCGTCGACTTCAGGGACGCGTT
LOC_Os10g32110
Target Sequence 
ATCATCCGGCAGTGCGGCGCGTCGAGCCGCTGCAACCTCTTCCACTGCCACGGCGCGGCGGCGAGCGGGTGCAACGCCCC
CGGCGCCGTCATGCGCGTGTTCGAGAGCTCCCGCTTCTGCCTCGAGCCACGGGGGGACACCATGACGCGGCGCTCGACGT
TCGACGCCATCCTCGCCGGCTGCATCCCGGTGTTCTTCCACCCCGGGTCGGCCTACACCCAGTACACGCTGCACCTCCCG
CCGGAACGCGGCGGGTGGTCGGTGCTCATCCCCCACGCCGACGTGACCGGCCGGAACGTGAGCATCGAGGAGACGCTGGC
GGCGATCTCGCCGGAGAAGGTGAGGAGCATGCGGGAGGAGGTGATCCGGCTCATCCCGACGGTGGTGTACGCCGACACGA
GGTCGAGCCGCGTCGACTTCAGGGACGCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8050.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis