Browse Element(s) Details


OsAffx.30634.1.S1_at

Description tigr:9638.m02788
TID=OsAffx.30634.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g321402/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32110OsAffx.8050.1.S1_at11/1110+16532458..16533864Exostosin family protein, expressed
LOC_Os10g32110OsAffx.8050.1.S1_x_at11/1110+16532458..16533864Exostosin family protein, expressed
LOC_Os10g32110Os.46796.2.S1_x_at1/1110+16532458..16533864Exostosin family protein, expressed
LOC_Os10g32124OsAffx.32166.1218.S1_x_at10/1110+16544822..16553037retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32140OsAffx.30634.1.S1_at2/1110+16556712..16557123hypothetical protein
LOC_Os10g32150OsAffx.18487.1.S1_x_at11/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32150OsAffx.18487.1.S1_at11/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32150Os.53480.1.S1_x_at5/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32150Os.56035.1.S1_at1/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32150Os.52587.2.S1_at1/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32160Os.46796.2.S1_at11/1110+16563439..16565414Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32160Os.46796.2.S1_x_at11/1110+16563439..16565414Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32160OsAffx.8050.1.S1_x_at1/1110+16563439..16565414Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32170Os.46796.1.S1_at11/1110+16567293..16569410Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32170Os.46796.2.S1_x_at7/1110+16567293..16569410Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32170OsAffx.8050.1.S1_x_at1/1110+16567293..16569410Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32190OsAffx.6834.1.S1_at11/1110+16571924..16577087hypothetical protein
LOC_Os10g32199NANA10+16579892..16582096expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30634.1.S1_at--555--7851Chr10:16556136..16556160 (25 bp)
GGTAGCCTCGATCTTTGTGTCGCAT
NONE
OsAffx.30634.1.S1_at--727--8671Chr10:16556151..16556175 (25 bp)
TGTGTCGCATCTTCATGGAGGGATC
NONE
OsAffx.30634.1.S1_at--611--4531Chr10:16556193..16556217 (25 bp)
GCCCCTGTGGGCTGTTTCGAAGCAA
NONE
OsAffx.30634.1.S1_at--603--6791Chr10:16556206..16556230 (25 bp)
GTTTCGAAGCAAGCGGAGCCCGTGA
NONE
OsAffx.30634.1.S1_at--1112--9311Chr10:16556263..16556287 (25 bp)
TCGCTGATGCTTTAGACTTTGGATT
NONE
OsAffx.30634.1.S1_at--367--10851Chr10:16556281..16556305 (25 bp)
TTGGATTGGCGCAATGTCCCGTGGA
NONE
OsAffx.30634.1.S1_at--838--751Chr10:16556294..16556318 (25 bp)
ATGTCCCGTGGATGATGGGCCGAAA
NONE
OsAffx.30634.1.S1_at--38--7571Chr10:16556310..16556334 (25 bp)
GGGCCGAAATTTCTTCTTAGCTTCA
NONE
OsAffx.30634.1.S1_at--925--3651Chr10:16556696..16556717 (22 bp)
CTTCAGCATCATCTGGAGCATGGGA
NONE
OsAffx.30634.1.S1_at--546--9171Chr10:16556736..16556760 (25 bp)
TGCCGCGACTTGAACTTCCTGATCG
LOC_Os10g32140
OsAffx.30634.1.S1_at--432--3252Chr10:16556791..16556811 (21 bp)
CAACCAGCAGAAGCCTCGTCGAAGG
LOC_Os10g32140
Target Sequence 
GGTAGCCTCGATCTTTGTGTCGCATCTTCATGGAGGGATCGAGGCAATGGGACGGTTGCCCCTGTGGGCTGTTTCGAAGC
AAGCGGAGCCCGTGAGATTCATGGGCCGGAATCTCCCCCGATCCTGGTCGCTGATGCTTTAGACTTTGGATTGGCGCAAT
GTCCCGTGGATGATGGGCCGAAATTTCTTCTTAGCTTCAGCATCATCTGGAGCATGGGAGCCGGCCGGGATCGGCCCTGC
CGCGACTTGAACTTCCTGATCGCCGCCTTGAGCACCCGCCTCCTGAAGAATCCAACCAGCAGAAGCCTCGTCGAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30634.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis