Browse Element(s) Details


Os.46796.2.S1_x_at

Description gb:AK110989.1
DB_XREF= gi:32996198
TID=Os.46796.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46796 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0042E19.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-D08, full insert sequence.
FL= gb:AK110989.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3216011/11Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g321707/11Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g321101/11Exostosin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32124OsAffx.32166.1218.S1_x_at10/1110+16544822..16553037retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32140OsAffx.30634.1.S1_at2/1110+16556712..16557123hypothetical protein
LOC_Os10g32150OsAffx.18487.1.S1_x_at11/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32150OsAffx.18487.1.S1_at11/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32150Os.53480.1.S1_x_at5/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32150Os.56035.1.S1_at1/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32150Os.52587.2.S1_at1/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32160Os.46796.2.S1_at11/1110+16563439..16565414Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32160Os.46796.2.S1_x_at11/1110+16563439..16565414Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32160OsAffx.8050.1.S1_x_at1/1110+16563439..16565414Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32170Os.46796.1.S1_at11/1110+16567293..16569410Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32170Os.46796.2.S1_x_at7/1110+16567293..16569410Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32170OsAffx.8050.1.S1_x_at1/1110+16567293..16569410Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32190OsAffx.6834.1.S1_at11/1110+16571924..16577087hypothetical protein
LOC_Os10g32199NANA10+16579892..16582096expressed protein
LOC_Os10g32210NANA10+16589834..16590547hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46796.2.S1_x_at--553--8351Chr10:16564816..16564840 (25 bp)
GGCGGCGAGCTACATGAGACTCTTC
LOC_Os10g32160
Os.46796.2.S1_x_at--837--9832Chr10:16564880..16564904 (25 bp)
TACACGCGCAAGTCGGCGTTCGACG
LOC_Os10g32160
Os.46796.2.S1_x_at--1081--7152Chr10:16565000..16565024 (25 bp)
GTCTACATCTCCGAGGACGACGTGC
LOC_Os10g32160
Os.46796.2.S1_x_at--488--553Chr10:16565108..16565132 (25 bp)
ATCCCGACGGTGGTGTACGCGCAGC
LOC_Os10g32160
Os.46796.2.S1_x_at--772--1672Chr10:16565130..16565154 (25 bp)
AGCCGTCGTCGAGGCTGGACACGAT
LOC_Os10g32160
Os.46796.2.S1_x_at--753--2172Chr10:16565148..16565172 (25 bp)
ACACGATGAAGGACGCGTTCGACGT
LOC_Os10g32160
Os.46796.2.S1_x_at--926--7512Chr10:16565177..16565201 (25 bp)
GTGGACGCCATCGTCGACAAGGTGA
LOC_Os10g32160
Os.46796.2.S1_x_at--596--8513Chr10:16565264..16565288 (25 bp)
TGGAAGTATCCATTGCTGCGAGAAG
LOC_Os10g32160
Os.46796.2.S1_x_at--182--7491Chr10:16565314..16565338 (25 bp)
GTGGGATTCATTGTTCGCGTTCGCC
LOC_Os10g32160
Os.46796.2.S1_x_at--718--3711Chr10:16565338..16565362 (25 bp)
CTAGCTCACCATTTCTACCAATTAA
LOC_Os10g32160
Os.46796.2.S1_x_at--92--3132Chr10:16565362..16565386 (25 bp)
AATTTGACCTTCATGTTTGTGAAGT
LOC_Os10g32160
Target Sequence 
GGCGGCGAGCTACATGAGACTCTTCCAGAGCTCCACCTTCTGCCTCCAGCCGCAGGGCGACTCNTACACGCGCAAGTCGG
CGTTCGACGCCATGCTCGCCGGCTGCATCCCGGTGTTCTTCCACCCCGGCACGGCGTACGTCCAGTACACCTGGCACCTG
CCCAGGAACCACGCCGACTACTCCGTCTACATCTCCGAGGACGACGTGCGCCGCAACGCCAGCATCGAGGAGCGGCTGCG
GCGGATCGCGCCGGCCGCCGTGGAGCGGATGAGGGAGACGGTCATCTCGCTCATCCCGACGGTGGTGTACGCGCAGCCGT
CGTCGAGGCTGGACACGATGAAGGACGCGTTCGACGTGGCGGTGGACGCCATCGTCGACAAGGTGACGAGGCTGCGGCGC
GACATCGTCGACGGCCGCGGCGAGGAGGAGAAGCTGGAGATGTACAGCTGGAAGTATCCATTGCTGCGAGAAGGGCAGAA
GGTCGAGGACCCCCATGAGTGGGATTCATTGTTCGCGTTCGCCTAGCTCACCATTTCTACCAATTAAATTTGACCTTCAT
GTTTGTGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46796.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis