Browse Element(s) Details


Os.52587.2.S1_at

Description gb:AK110800.1
DB_XREF= gi:32996009
TID=Os.52587.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52587 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-E06, full insert sequence.
FL= gb:AK110800.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g321501/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32110OsAffx.8050.1.S1_at11/1110+16532458..16533864Exostosin family protein, expressed
LOC_Os10g32110OsAffx.8050.1.S1_x_at11/1110+16532458..16533864Exostosin family protein, expressed
LOC_Os10g32110Os.46796.2.S1_x_at1/1110+16532458..16533864Exostosin family protein, expressed
LOC_Os10g32124OsAffx.32166.1218.S1_x_at10/1110+16544822..16553037retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32140OsAffx.30634.1.S1_at2/1110+16556712..16557123hypothetical protein
LOC_Os10g32150OsAffx.18487.1.S1_x_at11/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32150OsAffx.18487.1.S1_at11/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32150Os.53480.1.S1_x_at5/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32150Os.56035.1.S1_at1/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32150Os.52587.2.S1_at1/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32160Os.46796.2.S1_at11/1110+16563439..16565414Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32160Os.46796.2.S1_x_at11/1110+16563439..16565414Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32160OsAffx.8050.1.S1_x_at1/1110+16563439..16565414Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32170Os.46796.1.S1_at11/1110+16567293..16569410Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32170Os.46796.2.S1_x_at7/1110+16567293..16569410Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32170OsAffx.8050.1.S1_x_at1/1110+16567293..16569410Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32190OsAffx.6834.1.S1_at11/1110+16571924..16577087hypothetical protein
LOC_Os10g32199NANA10+16579892..16582096expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52587.2.S1_at--245--91Chr02:2369374..2369398 (25 bp)
ATTGCCAGCCAAGTAGTGCGTGCGT
NONE
Os.52587.2.S1_at--435--4631Chr02:2369357..2369381 (25 bp)
GCGTGCGTGCAGATTAGGATTAGTC
NONE
Os.52587.2.S1_at--600--2712Chr12:8109363..8109387 (25 bp)
AAGCAGTTGCGATACTTGTGGAGTT
NONE
Os.52587.2.S1_at--675--6611Chr02:2369199..2369223 (25 bp)
GTTGTGACCAAGTAAACCGGACGTG
NONE
Os.52587.2.S1_at--281--9392Chr07:11108008..11108032 (25 bp)
TCGTGTGTAGCTTGAGAATCGGAAC
NONE
Os.52587.2.S1_at--575--2031Chr02:2369038..2369062 (25 bp)
ACTAGTTGCGTGCTTGTGCCACAAA
NONE
Os.52587.2.S1_at--372--331Chr02:2369013..2369037 (25 bp)
ATACTCAATGTGCTGTGTTCTTCTT
NONE
Os.52587.2.S1_at--399--10331Chr02:2368990..2369014 (25 bp)
TTTCTTGTGCTCTTCACGTGTAAGT
NONE
Os.52587.2.S1_at--985--213Chr10:16559185..16559209 (25 bp)
ATTTGTGTCCACTGTGTTCGCGTGA
LOC_Os10g32150
Os.52587.2.S1_at--633--3991Chr02:2368942..2368966 (25 bp)
CGTGAGTTCCCTTGATTCCTAACAA
NONE
Os.52587.2.S1_at--839--3931Chr02:2368868..2368892 (25 bp)
CGGCATGTGATTTAGCCAGGGCTAT
NONE
Target Sequence 
ATTGCCAGCCAAGTAGTGCGTGCGTGCAGATTAGGATTAGTCTCAGGATTATGTGGTGAATTAGTCTTGCATGTATTAGT
TAGTTGCAGGTTAGTTGGTTGGTGTGAGCAACGACGTCGGCGAGGACTCAGTAGTGGAGATGCGGACTGAGTCAAGCAGT
TGCGATACTTGTGGAGTTGTGACCAAGTAAACCGGACGTGGGCGTCGTGTGTAGCTTGAGAATCGGAACAACCAGCTTCG
TGTGTGTATATGCGATTAGTAGTATGCGAGGGTTATAAATAGCTGCTCATTGTAATCATTTGTTTAAGTGTGAATAAAAT
TAGCAAGAGAAAAGGCACTAGTTGCGTGCTTGTGCCACAAAATACTCAATGTGCTGTGTTCTTCTTTCTTGTGCTCTTCA
CGTGTAAGTGTGATTTGTGTCCACTGTGTTCGCGTGAGTTCCCTTGATTCCTAACAAGTGCGGCGGCGTCCGGGGAGCAC
GGCGGGTGGGAAGGGAGGAAGGGGGACGGCATGTGATTTAGCCAGGGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52587.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis