Browse Element(s) Details


OsAffx.18497.1.S1_at

Description gb:NM_196926.1
DB_XREF= gi:37535211
TID=OsAffx.18497.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0006L06.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3291011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32870Os.46562.1.S1_at11/1110+16872128..16873689ribosomal protein L11 containing protein, expressed
LOC_Os10g32880Os.37656.1.S1_at11/1110+16874196..16881229PRP19/PSO4 homolog, putative, expressed
LOC_Os10g32890OsAffx.18496.1.S1_at11/1110+16883498..16884608hypothetical protein
LOC_Os10g32900Os.3195.2.S1_x_at11/1110+16892289..16895208CCT motif family protein, expressed
LOC_Os10g32900Os.52047.1.S1_x_at1/1110+16892289..16895208CCT motif family protein, expressed
LOC_Os10g32910OsAffx.18497.1.S1_at11/1110+16897157..16897627hypothetical protein
LOC_Os10g32920Os.3196.1.S1_at11/1110+16897967..1689997960S ribosomal protein L23, putative, expressed
LOC_Os10g32930OsAffx.30647.1.S1_x_at3/1110+16907347..16907616hypothetical protein
LOC_Os10g32930Os.46842.1.S1_at1/1110+16907347..16907616hypothetical protein
LOC_Os10g32940OsAffx.30647.1.S1_x_at11/1110+16914752..16915039expressed protein
LOC_Os10g32950OsAffx.20261.1.S1_at11/1110+16918861..16920479retrotransposon protein, putative, LINE subclass
LOC_Os10g32960Os.46065.1.S1_at11/1110+16921376..16926192Pex2/Pex12 amino terminal region family protein, expressed
LOC_Os10g32960Os.46065.2.S1_x_at9/1110+16921376..16926192Pex2/Pex12 amino terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18497.1.S1_at--613--9071Chr10:16897190..16897214 (25 bp)
TGCTTTGCCATTGTGCCCCTAGAGA
LOC_Os10g32910
OsAffx.18497.1.S1_at--278--491Chr10:16897295..16897319 (25 bp)
ATCGTGCCCCTTGAGAGCGGAGAAG
LOC_Os10g32910
OsAffx.18497.1.S1_at--649--6971Chr10:16897386..16897410 (25 bp)
GTACCCAAGTTACCGCCGCTCTAGT
LOC_Os10g32910
OsAffx.18497.1.S1_at--967--1191Chr10:16897393..16897417 (25 bp)
AGTTACCGCCGCTCTAGTCGCTCGT
LOC_Os10g32910
OsAffx.18497.1.S1_at--990--9291Chr10:16897427..16897451 (25 bp)
TCCGCTCGCCGCCAGAGTTGGGAAA
LOC_Os10g32910
OsAffx.18497.1.S1_at--227--6631Chr10:16897443..16897467 (25 bp)
GTTGGGAAACGTCATTGTCACTGTC
LOC_Os10g32910
OsAffx.18497.1.S1_at--346--51Chr10:16897456..16897480 (25 bp)
ATTGTCACTGTCATGCTTGAAGGCT
LOC_Os10g32910
OsAffx.18497.1.S1_at--873--631Chr10:16897468..16897492 (25 bp)
ATGCTTGAAGGCTGTCATCGCTTTC
LOC_Os10g32910
OsAffx.18497.1.S1_at--276--9391Chr10:16897521..16897545 (25 bp)
TCGAGGCCAAGCACCGAAGTTCCTT
LOC_Os10g32910
OsAffx.18497.1.S1_at--195--2831Chr10:16897537..16897561 (25 bp)
AAGTTCCTTCGCTGCCGCATCGAGG
LOC_Os10g32910
OsAffx.18497.1.S1_at--746--9371Chr10:16897556..16897580 (25 bp)
TCGAGGCCAAGCACTGAAGTTGGGA
LOC_Os10g32910
Target Sequence 
TGCTTTGCCATTGTGCCCCTAGAGACCCTTCGCCATCACCTCGCCCTCTTGCCGCGCACAGCCATGGCCCGTCGCCGCCG
CTTCGCCCTCTCGGCGTGCTTCGCCATCGTGCCCCTTGAGAGCGGAGAAGGCCGTCGCTGCTTTTCCTGCCGCCGAGCTC
CTTCGCCACATCAAGGCCGAGCGCCGCCTTCCCCGCGTACCCAAGTTACCGCCGCTCTAGTCGCTCGTCGCCGAAGCTCC
GCTCGCCGCCAGAGTTGGGAAACGTCATTGTCACTGTCATGCTTGAAGGCTGTCATCGCTTTCCCTGCCACCGAGCTCCT
TCGCTACCGCATCGAGGCCAAGCACCGAAGTTCCTTCGCTGCCGCATCGAGGCCAAGCACTGAAGTTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18497.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis