Browse Element(s) Details


OsAffx.18503.1.S1_at

Description tigr:9638.m02926
TID=OsAffx.18503.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative aspartate-semialdehyde dehydrogenase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3345011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33420Os.22652.2.S1_x_at11/1110+17255157..17263307expressed protein
LOC_Os10g33420Os.22652.1.S1_at11/1110+17255157..17263307expressed protein
LOC_Os10g33430NANA10+17271928..17272161hypothetical protein
LOC_Os10g33440OsAffx.18502.1.S1_at11/1110+17277212..17283556NB-ARC domain containing protein, expressed
LOC_Os10g33450OsAffx.18503.1.S1_at11/1110+17286836..17287819hypothetical protein
LOC_Os10g33460OsAffx.30655.1.S1_s_at11/1110+17289725..17294252GMC oxidoreductase family protein, expressed
LOC_Os10g33460OsAffx.8024.1.S1_x_at3/1110+17289725..17294252GMC oxidoreductase family protein, expressed
LOC_Os10g33460OsAffx.30655.2.S1_x_at1/1110+17289725..17294252GMC oxidoreductase family protein, expressed
LOC_Os10g33470NANA10+17296222..17299299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33480Os.47463.1.S1_x_at5/1110+17303343..17307043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33480Os.14491.2.S1_x_at5/1110+17303343..17307043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33484NANA10+17307676..17309738hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18503.1.S1_at--302--8251Chr10:17287398..17287422 (25 bp)
GGCACGACGCGGACATGTCGGCCAC
LOC_Os10g33450
OsAffx.18503.1.S1_at--790--2151Chr10:17287350..17287374 (25 bp)
ACACGGTGCTCTTCCCGGTGAACCA
LOC_Os10g33450
OsAffx.18503.1.S1_at--657--8371Chr10:17287285..17287309 (25 bp)
GGCGAGTACCGGATCCTCGACTCCT
LOC_Os10g33450
OsAffx.18503.1.S1_at--55--8331Chr10:17287083..17287107 (25 bp)
GGCTCTTCGCGATCAAGTGCATGGA
LOC_Os10g33450
OsAffx.18503.1.S1_at--121--9351Chr10:17287077..17287101 (25 bp)
TCGCGATCAAGTGCATGGAGCTCTG
LOC_Os10g33450
OsAffx.18503.1.S1_at--104--7691Chr10:17287030..17287054 (25 bp)
GGGTTCACCATGGACGACGTGCACG
LOC_Os10g33450
OsAffx.18503.1.S1_at--339--9671Chr10:17287026..17287050 (25 bp)
TCACCATGGACGACGTGCACGAGCT
LOC_Os10g33450
OsAffx.18503.1.S1_at--305--6311Chr10:17286940..17286964 (25 bp)
GATGAGATCGAGTTCATGGCGAGAA
LOC_Os10g33450
OsAffx.18503.1.S1_at--452--3551Chr10:17286894..17286918 (25 bp)
CATCTTCTCCTCTGCGAAATTGCGG
LOC_Os10g33450
OsAffx.18503.1.S1_at--449--9251Chr10:17286887..17286911 (25 bp)
TCCTCTGCGAAATTGCGGCGATCGT
LOC_Os10g33450
OsAffx.18503.1.S1_at--443--4691Chr10:17286873..17286897 (25 bp)
GCGGCGATCGTGTGAAATTGGCAAC
LOC_Os10g33450
Target Sequence 
GGCACGACGCGGACATGTCGGCCACGGGCGCCAGGTACCTCGCCCACGACACGGTGCTCTTCCCGGTGAACCACCAGTCC
CACTTCTTCGTGGCGGCGCTCGACGTCGCCGCCGGCGAGTACCGGATCCTCGACTCCTCCAACTACGGCCGCCGCTTCGG
CCCCAGATTCTACGACGCCGCCATGTCCAAGATACGGGGCGGCGTCGCGCGGTGCGTGGCGGCGGCCGGGCGGGCGGGGG
CGGAGGCGGACGCCGGCGGATGGAAGCTGCGGATGGTCGCCGGCCTCCCGGCGCAGACCGACGAGTCGTCGTGCGGGCTC
TTCGCGATCAAGTGCATGGAGCTCTGGGACGGGGAGAAGCTGGAGCGGGGGTTCACCATGGACGACGTGCACGAGCTCCG
GCGGAAGCTCGCCGGCGAGCTCATCTTCTGGGAGCTGAACGAGATGCAGGAGGTGAAGGATGAGATCGAGTTCATGGCGA
GAAAGATGATGATGATGATGAGTTCATCTTCTCCTCTGCGAAATTGCGGCGATCGTGTGAAATTGGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18503.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis