Browse Element(s) Details


OsAffx.18505.1.S1_at

Description tigr:9638.m02940
TID=OsAffx.18505.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3360011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33560NANA10+17365848..17369399retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g33570NANA10+17371838..17376033retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g33600OsAffx.18505.1.S1_at11/1110+17386921..17387154hypothetical protein
LOC_Os10g33610OsAffx.9656.1.S1_x_at3/1110+17390836..17391330hypothetical protein
LOC_Os10g33610OsAffx.9656.3.S1_x_at2/1110+17390836..17391330hypothetical protein
LOC_Os10g33620Os.3046.1.S1_at11/1110+17393077..17395609Ubiquitin family protein, expressed
LOC_Os10g33630Os.3042.1.S1_at10/1110+17397043..17400163Adaptin ear-binding coat-associated protein 2, putative, expressed
LOC_Os10g33634NANA10+17402021..17402128NA
LOC_Os10g33640OsAffx.30659.1.S1_at11/1110+17403206..17406409Protein kinase domain containing protein, expressed
LOC_Os10g33650Os.46666.2.S1_x_at11/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33650Os.46666.1.S1_at11/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed
LOC_Os10g33650Os.52991.1.A1_at8/1110+17409814..17415110Casein kinase I, epsilon isoform, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18505.1.S1_at--339--3212Chr10:17387100..17387124 (25 bp)
CAAGGCGAGCAGATCCAGGTTGGCA
LOC_Os10g33600
OsAffx.18505.1.S1_at--612--1511Chr10:17387093..17387117 (25 bp)
AGCAGATCCAGGTTGGCATCGAAGC
LOC_Os10g33600
OsAffx.18505.1.S1_at--1121--571Chr10:17387088..17387112 (25 bp)
ATCCAGGTTGGCATCGAAGCGGAAG
LOC_Os10g33600
OsAffx.18505.1.S1_at--504--4971Chr10:17387078..17387102 (25 bp)
GCATCGAAGCGGAAGACGTGGACGT
LOC_Os10g33600
OsAffx.18505.1.S1_at--915--1911Chr10:17387057..17387081 (25 bp)
ACGTGGCTCCTGGAGATCTCGGCGT
LOC_Os10g33600
OsAffx.18505.1.S1_at--113--8331Chr10:17387053..17387077 (25 bp)
GGCTCCTGGAGATCTCGGCGTCAAA
LOC_Os10g33600
OsAffx.18505.1.S1_at--114--9271Chr10:17387050..17387074 (25 bp)
TCCTGGAGATCTCGGCGTCAAATAT
LOC_Os10g33600
OsAffx.18505.1.S1_at--489--6411Chr10:17387043..17387067 (25 bp)
GATCTCGGCGTCAAATATGACGGCG
LOC_Os10g33600
OsAffx.18505.1.S1_at--85--3111Chr10:17387030..17387054 (25 bp)
AATATGACGGCGCACTTGTTGGCGT
LOC_Os10g33600
OsAffx.18505.1.S1_at--128--1951Chr10:17387024..17387048 (25 bp)
ACGGCGCACTTGTTGGCGTCCACGG
LOC_Os10g33600
OsAffx.18505.1.S1_at--640--4592Chr10:21428969..21428992 (23 bp)
GCGAACGCGGCATGAGGAGGAACAC
NONE
Target Sequence 
CAAGGCGAGCAGATCCAGGTTGGCATCGAAGCGGAAGACGTGGACGTGGCTCCTGGAGATCTCGGCGTCAAATATGACGG
CGCACTTGTTGGCGTCCACGGGGCCCCACCTCCTGCCGGCGCCGGCGGTGGACGAGGCGGGCGAACGCGGCATGAGGAGG
AACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18505.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis