Browse Element(s) Details


OsAffx.18534.1.S1_at

Description tigr:9638.m03232
TID=OsAffx.18534.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3634011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36270Os.46510.1.S1_at11/1110+19059417..19067133Leucine Rich Repeat family protein, expressed
LOC_Os10g36270Os.46510.2.S1_x_at11/1110+19059417..19067133Leucine Rich Repeat family protein, expressed
LOC_Os10g36280OsAffx.7984.1.S1_at11/1110+19069264..19071275Leucine Rich Repeat family protein
LOC_Os10g36290NANA10+19072186..19072656NA
LOC_Os10g36300OsAffx.20217.1.S1_at11/1110+19074893..19076107hypothetical protein
LOC_Os10g36310OsAffx.18532.1.S1_at11/1110+19078192..19079655F-box protein interaction domain containing protein
LOC_Os10g36310OsAffx.20208.1.A1_x_at1/1110+19078192..19079655F-box protein interaction domain containing protein
LOC_Os10g36320NANA10+19080010..19080805hypothetical protein
LOC_Os10g36340OsAffx.18534.1.S1_at11/1110+19083661..19084407expressed protein
LOC_Os10g36350Os.27975.1.A1_at11/1110+19085952..19089076MSP domain containing protein, expressed
LOC_Os10g36360Os.14210.1.S1_at11/1110+19095851..19096532expressed protein
LOC_Os10g36370Os.10854.2.S1_x_at11/1110+19101460..19110154Chaperone protein dnaJ 13, putative, expressed
LOC_Os10g36370Os.10854.1.S1_a_at11/1110+19101460..19110154Chaperone protein dnaJ 13, putative, expressed
LOC_Os10g36370Os.10854.1.S2_a_at11/1110+19101460..19110154Chaperone protein dnaJ 13, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18534.1.S1_at--334--1731Chr10:19083886..19083910 (25 bp)
ACCTACGCCGCGGAGCAGTGCCCCG
LOC_Os10g36340
OsAffx.18534.1.S1_at--715--7731Chr10:19083991..19084015 (25 bp)
GGTGGTGCAACCGACTTCGCCGTGC
LOC_Os10g36340
OsAffx.18534.1.S1_at--940--7491Chr10:19083992..19084016 (25 bp)
GTGGTGCAACCGACTTCGCCGTGCT
LOC_Os10g36340
OsAffx.18534.1.S1_at--248--1451Chr10:19084133..19084157 (25 bp)
AGAAGTACAGGCTCGGGTATGGCCT
LOC_Os10g36340
OsAffx.18534.1.S1_at--407--9871Chr10:19084138..19084162 (25 bp)
TACAGGCTCGGGTATGGCCTCGCCG
LOC_Os10g36340
OsAffx.18534.1.S1_at--214--8491Chr10:19084172..19084196 (25 bp)
TGGCGGCGCCGTGGTACATGTCCAA
LOC_Os10g36340
OsAffx.18534.1.S1_at--455--4711Chr10:19084174..19084198 (25 bp)
GCGGCGCCGTGGTACATGTCCAAGC
LOC_Os10g36340
OsAffx.18534.1.S1_at--367--4271Chr10:19084177..19084201 (25 bp)
GCGCCGTGGTACATGTCCAAGCCGT
LOC_Os10g36340
OsAffx.18534.1.S1_at--1088--4471Chr10:19084179..19084203 (25 bp)
GCCGTGGTACATGTCCAAGCCGTCG
LOC_Os10g36340
OsAffx.18534.1.S1_at--875--4331Chr10:19084214..19084238 (25 bp)
CCATGGAGAGGAAGGATCGCGAGGC
LOC_Os10g36340
OsAffx.18534.1.S1_at--869--3771Chr10:19084348..19084372 (25 bp)
CTCGGCGTTCCATCGAGGAAGGAGA
LOC_Os10g36340
Target Sequence 
ACCTACGCCGCGGAGCAGTGCCCCGCGGATCCGGCCGACCCGTCCCCCGCCGCCGACGACTCAGACGGCGGCCACATCAA
CCTCTTCTCCGCCCGCGGCGGCGGCGGTGGTGCAACCGACTTCGCCGTGCTCGCCTCCGCCGACGGTGGGAGGGGCGCCG
CCAGGGAGCGGGAGCCTCCCGCGAACCCTAACCCTAAGAAGCGGAAGAGGAAGGAGGAGGAGGTGAGGGCGGTGGGGCCC
GACGAGGAGAAGTACAGGCTCGGGTATGGCCTCGCCGGGAAGGGCGTGGCGGCGCCGTGGTACATGTCCAAGCCGTCGGC
TTCATCCTCCATGGAGAGGAAGGATCGCGAGGCGGGAGAAGGGAGTGTGGGGAAGAAGAATGGTGGGAAGAAGAGCATTG
AGGAGCTTAGGGAGGAGAGGAGGAAGAGGGAGGCCAAGGAGAAGGAGCGAGAGCGAGCGCTGCTCGGCGTTCCATCGAGG
AAGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18534.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis