Browse Element(s) Details


OsAffx.18540.1.S1_x_at

Description tigr:9638.m03268
TID=OsAffx.18540.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3667011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36620Os.46597.2.S1_at7/1110+19264676..19265368expressed protein
LOC_Os10g36634OsAffx.30691.1.S1_at11/1110+19267643..19271670hypothetical protein
LOC_Os10g36634OsAffx.20209.1.S1_at11/1110+19267643..19271670hypothetical protein
LOC_Os10g36650Os.19742.1.S1_at11/1110+19277241..19281153Actin-2, putative, expressed
LOC_Os10g36660OsAffx.20208.1.S1_at11/1110+19282907..19283710hypothetical protein
LOC_Os10g36660OsAffx.20208.1.S1_x_at11/1110+19282907..19283710hypothetical protein
LOC_Os10g36670OsAffx.18540.1.S1_at11/1110+19285544..19286365expressed protein
LOC_Os10g36670OsAffx.18540.1.S1_x_at11/1110+19285544..19286365expressed protein
LOC_Os10g36680OsAffx.20207.1.S1_at11/1110+19287802..19288929membrane associated salt-inducible protein, putative
LOC_Os10g36690Os.5030.1.S1_at11/1110+19291938..19296510dehydration-responsive family protein, putative, expressed
LOC_Os10g36699NANA10+19301947..19303104expressed protein
LOC_Os10g36710Os.20211.1.S1_at11/1110+19311132..19316287CDPK-related protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18540.1.S1_x_at--1131--5791Chr10:19285850..19285874 (25 bp)
GACGCCTACGGCACGTTCGAGTCGG
LOC_Os10g36670
OsAffx.18540.1.S1_x_at--58--7211Chr10:19286041..19286065 (25 bp)
GTCGAGGACAGCGAACGACGCCGAC
LOC_Os10g36670
OsAffx.18540.1.S1_x_at--490--1051Chr10:19286070..19286094 (25 bp)
AGGTGGTCGGCATCGTGGCGGAGGC
LOC_Os10g36670
OsAffx.18540.1.S1_x_at--20--3211Chr10:19286145..19286169 (25 bp)
CAATGTCGCGGGACGTGCCGGCCAT
LOC_Os10g36670
OsAffx.18540.1.S1_x_at--966--1891Chr10:19286157..19286181 (25 bp)
ACGTGCCGGCCATGGTGCAGACAGC
LOC_Os10g36670
OsAffx.18540.1.S1_x_at--212--3931Chr10:19286163..19286187 (25 bp)
CGGCCATGGTGCAGACAGCGGCATC
LOC_Os10g36670
OsAffx.18540.1.S1_x_at--1117--3411Chr10:19286174..19286198 (25 bp)
CAGACAGCGGCATCGCACAAGTGGG
LOC_Os10g36670
OsAffx.18540.1.S1_x_at--704--2871Chr10:19286192..19286216 (25 bp)
AAGTGGGCGTGGCTTGGCGTGACTC
LOC_Os10g36670
OsAffx.18540.1.S1_x_at--453--4011Chr10:19286235..19286259 (25 bp)
CGTCGCCGGCATTGGAGAAACTGGA
LOC_Os10g36670
OsAffx.18540.1.S1_x_at--724--1611Chr10:19286262..19286286 (25 bp)
AGCTGGAAGAATGCATTGGTGAGAT
LOC_Os10g36670
OsAffx.18540.1.S1_x_at--70--3491Chr10:19286311..19286335 (25 bp)
CAGGAGGTTGCTGCAGACAAGAGTT
LOC_Os10g36670
Target Sequence 
GACGCCTACGGCACGTTCGAGTCGGCGGTGCTCGCGCTCAGGCAGAGCGCGGCGGAGCTGCGCGCCGGCGCGCGGCGTGG
CGACGGCGCGACGGTCGCCACGGCGCTCCGAGCGCACCGGCGGACGGAGAGGGAGCTGTGCCGCCTCGCCGCCGCGATGC
GACACGCGGTGCGGCGCACGCCGGCGGCGGCGTCGAGGACAGCGAACGACGCCGACGGCGAGGTGGTCGGCATCGTGGCG
GAGGCGGCCGCGGTGACCGCGGCGGCGTCGGAGGCGATCCTCCTCCGGTGCGCGGCAATGTCGCGGGACGTGCCGGCCAT
GGTGCAGACAGCGGCATCGCACAAGTGGGCGTGGCTTGGCGTGACTCGGGCGGCCAAGAAGGCGGCGTCGCCGGCATTGG
AGAAACTGGAGGAGCTGGAAGAATGCATTGGTGAGATGGAGAGTGGCAGCGAGAAGGTGTTCAGGAGGTTGCTGCAGACA
AGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18540.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis