Browse Element(s) Details


OsAffx.18586.1.S1_at

Description tigr:9638.m03624
TID=OsAffx.18586.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative WW-domain oxidoreductase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g400209/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39980Os.46507.1.S1_at11/1110+21087608..21090146transmembrane protein, putative, expressed
LOC_Os10g39990OsAffx.6920.1.S1_at10/1110+21094679..21095948short-chain dehydrogenase/reductase, putative
LOC_Os10g40000NANA10+21097385..21098658short-chain dehydrogenase/reductase, putative, expressed
LOC_Os10g40010NANA10+21101773..21102135hypothetical protein
LOC_Os10g40020OsAffx.18586.1.S1_at9/1110+21104533..21109608NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os10g40030Os.51462.1.S1_at11/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40030Os.19752.2.S1_x_at11/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40030Os.19752.1.S1_at5/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40040Os.3280.1.S1_at11/1110+21114647..21115801expressed protein
LOC_Os10g40050Os.3277.1.S1_a_at11/1110+21116194..21123894TPR Domain containing protein, expressed
LOC_Os10g40060Os.46130.1.S1_a_at11/1110+21124348..21130057protein kinase family protein, putative, expressed
LOC_Os10g40070OsAffx.7927.1.S1_at11/1110+21130337..21130941expressed protein
LOC_Os10g40080OsAffx.31578.2.S1_at11/1110+21132668..21133649hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009706cellular_componentchloroplast inner membrane
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18586.1.S1_at--983--10731Chr10:21107002..21107167 (25 bp)
TTGCAACAAATCACATCGGCCACTT
LOC_Os10g40020
OsAffx.18586.1.S1_at--555--8431Chr10:21106985..21107009 (25 bp)
GGCCACTTTCTTCTAACAAATCTCT
LOC_Os10g40020
OsAffx.18586.1.S1_at--602--7451Chr10:21106901..21106925 (25 bp)
GTGTCGTCTTCAGCACATTTTGTGA
LOC_Os10g40020
OsAffx.18586.1.S1_at--642--8091NONE
GGAGCCTTCAAGATTCATCAGTCTT
NONE
OsAffx.18586.1.S1_at--480--7151Chr10:21106469..21106493 (25 bp)
GTCTTATTGCTTATGGCCAGTCTAA
LOC_Os10g40020
OsAffx.18586.1.S1_at--390--5491Chr10:21106289..21106313 (25 bp)
GAACATTTCGGCTAATGCAGTCCAT
LOC_Os10g40020
OsAffx.18586.1.S1_at--1059--5011Chr10:21106273..21106297 (25 bp)
GCAGTCCATCCTGGTGTTGTTACAA
LOC_Os10g40020
OsAffx.18586.1.S1_at--335--8791Chr10:21106256..21106280 (25 bp)
TGTTACAACCAACCTGTTCAGGCAC
LOC_Os10g40020
OsAffx.18586.1.S1_at--695--3571NONE
CATTCACAAGGGTAGGGCTCGATTC
NONE
OsAffx.18586.1.S1_at--477--1611Chr10:21104629..21104653 (25 bp)
AGCGGATTTGCTTCGATTCTTAGGA
LOC_Os10g40020
OsAffx.18586.1.S1_at--130--991Chr10:21104583..21104607 (25 bp)
AGGATCGGAATTCCCTCAATCGGAT
LOC_Os10g40020
Target Sequence 
TTGCAACAAATCACATCGGCCACTTTCTTCTAACAAATCTCTTGCTGGAGAACATGAAGAGGACAAGTAGCAAAACTGGT
GTTGAAGGAAGGATCGTAAATGTGTCGTCTTCAGCACATTTTGTGACCTATCCTAAAGGGATATGTTTCGATAAGGTGAA
GGAGCCTTCAAGATTCATCAGTCTTATTGCTTATGGCCAGTCTAAGCTTGCCAACATTTTGCACTCAACTGAGCTGTCAC
GAGTTCTGAAGGAAGATGGTGTGAACATTTCGGCTAATGCAGTCCATCCTGGTGTTGTTACAACCAACCTGTTCAGGCAC
AGGACTATTATAAATGCTCTAGTGAAGTCCATTGGAAGATTCGTACACAAAACTGTAGAACAGATAATTTTATCATTCTT
AACCATTCACAAGGGTAGGGCTCGATTCCGAGCTCGATACGAAGCGGATTTGCTTCGATTCTTAGGAAAATGGAAAAAGA
ATGAGATAAGGATCGGAATTCCCTCAATCGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18586.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis