Browse Element(s) Details


OsAffx.18589.1.S1_s_at

Description tigr:9638.m03671
TID=OsAffx.18589.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative lipid transfer protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4048011/11Cortical cell delineating protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40410Os.6910.1.S1_at10/1110+21322347..21325319expressed protein
LOC_Os10g40420Os.26482.1.S1_at11/1110+21325706..21326566Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g40430Os.4194.1.S1_at11/1110+21328407..21329181Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g40440Os.46052.1.S1_at11/1110+21332769..21333534Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40440Os.46629.1.S1_s_at1/1110+21332769..21333534Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40450OsAffx.20147.1.S1_x_at11/1110+21335521..21336003hypothetical protein
LOC_Os10g40450OsAffx.20147.1.S1_at11/1110+21335521..21336003hypothetical protein
LOC_Os10g40460Os.46629.1.S1_s_at5/1110+21337635..21338254Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40470Os.46629.1.S1_s_at1/1110+21341072..21341467Cortical cell delineating protein precursor, putative
LOC_Os10g40480Os.46629.1.S1_s_at11/1110+21344977..21345668Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40480OsAffx.18589.1.S1_s_at11/1110+21344977..21345668Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40490Os.25142.1.A1_at11/1110+21349409..21351745U-box domain containing protein, expressed
LOC_Os10g40510Os.6838.1.S1_at11/1110+21360623..21361403Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40520Os.22427.1.S1_at11/1110+21364191..21364817Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40530Os.36913.1.S1_at11/1110+21367364..21368093Cortical cell delineating protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18589.1.S1_s_at--537--3171Chr10:21345164..21345188 (25 bp)
AATTGAGCTCAAACCGTGCGTGCAG
LOC_Os10g40480
OsAffx.18589.1.S1_s_at--857--2371Chr10:21345154..21345178 (25 bp)
AAACCGTGCGTGCAGCATGTTGGAT
LOC_Os10g40480
OsAffx.18589.1.S1_s_at--987--7291Chr10:21345149..21345173 (25 bp)
GTGCGTGCAGCATGTTGGATATCAT
LOC_Os10g40480
OsAffx.18589.1.S1_s_at--832--8891Chr10:21345118..21345142 (25 bp)
TGAGTTTGATCTTTCATCCCGATTC
LOC_Os10g40480
OsAffx.18589.1.S1_s_at--149--10231Chr10:21345114..21345138 (25 bp)
TTTGATCTTTCATCCCGATTCCCGA
LOC_Os10g40480
OsAffx.18589.1.S1_s_at--195--5791Chr10:21345091..21345115 (25 bp)
GACGCAGCGTTAAACATTAATCTTG
LOC_Os10g40480
OsAffx.18589.1.S1_s_at--708--3151Chr10:21345062..21345086 (25 bp)
AATTCTCTTGTTTACTCGATTCGCC
LOC_Os10g40480
OsAffx.18589.1.S1_s_at--1094--8771Chr10:21345054..21345078 (25 bp)
TGTTTACTCGATTCGCCATTTGCAG
LOC_Os10g40480
OsAffx.18589.1.S1_s_at--685--4431Chr10:21345040..21345064 (25 bp)
GCCATTTGCAGCTCGTTCTATATTA
LOC_Os10g40480
OsAffx.18589.1.S1_s_at--1152--9031Chr10:21345034..21345058 (25 bp)
TGCAGCTCGTTCTATATTATAATGT
LOC_Os10g40480
OsAffx.18589.1.S1_s_at--183--9591Chr10:21345004..21345028 (25 bp)
TCTTGAATCACTTGGTTGTTGTATA
LOC_Os10g40480
Target Sequence 
AATTGAGCTCAAACCGTGCGTGCAGCATGTTGGATATCATGATTCATGAGTTTGATCTTTCATCCCGATTCCCGACGCAG
CGTTAAACATTAATCTTGAAATAATTCTCTTGTTTACTCGATTCGCCATTTGCAGCTCGTTCTATATTATAATGTAAAAT
TCTTGAATCACTTGGTTGTTGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18589.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis