Browse Element(s) Details


OsAffx.18634.1.S1_at

Description tigr:9639.m00124
TID=OsAffx.18634.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0220011/11expressed protein
LOC_Os12g021503/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02150Os.14873.1.S1_at10/1111+591079..593754Saposin-like type B, region 1 family protein, expressed
LOC_Os11g02170OsAffx.19452.1.S1_x_at11/1111+600257..600898expressed protein
LOC_Os11g02180Os.5998.1.S1_at5/1111+601590..605844Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os11g02190Os.35188.1.S1_at5/1111+609006..614403expressed protein
LOC_Os11g02200OsAffx.18634.1.S1_at11/1111+617440..619126expressed protein
LOC_Os11g02200Os.46014.1.S1_s_at5/1111+617440..619126expressed protein
LOC_Os11g02210OsAffx.31551.2.S1_s_at11/1111+619887..620816hypothetical protein
LOC_Os11g02210OsAffx.31551.2.S1_at11/1111+619887..620816hypothetical protein
LOC_Os11g02210OsAffx.31551.1.S1_at3/1111+619887..620816hypothetical protein
LOC_Os11g02220OsAffx.30780.1.S1_at11/1111+622812..623552hypothetical protein
LOC_Os11g02230OsAffx.19454.1.S1_at11/1111+625870..627066hypothetical protein
LOC_Os11g02240Os.1310.1.S1_a_at11/1111+629587..632625CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os11g02250OsAffx.19456.1.S1_at11/1111+640564..641001Zinc finger, C3HC4 type family protein
LOC_Os11g02260OsAffx.30781.2.S1_at11/1111+641580..641984Zinc finger, C3HC4 type family protein
LOC_Os11g02260OsAffx.30781.1.S1_s_at11/1111+641580..641984Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18634.1.S1_at--589--2371Chr11:617620..617644 (25 bp)
AAACCATTCTTTCTTGGTCGCTCCA
LOC_Os11g02200
OsAffx.18634.1.S1_at--384--7231Chr11:617636..617660 (25 bp)
GTCGCTCCATACTATTCTTGGGTTA
LOC_Os11g02200
OsAffx.18634.1.S1_at--1095--6771Chr11:617657..617681 (25 bp)
GTTAGGTTACCTCACACACACGTTT
LOC_Os11g02200
OsAffx.18634.1.S1_at--768--6831Chr11:617678..617702 (25 bp)
GTTTCATGACATCCCTTGCTAGAGG
LOC_Os11g02200
OsAffx.18634.1.S1_at--573--6171Chr11:617699..617723 (25 bp)
GAGGACTAACGCTTCAATTCTACTG
LOC_Os11g02200
OsAffx.18634.1.S1_at--829--111Chr11:617715..617739 (25 bp)
ATTCTACTGCTTAATTCCTGCTACG
LOC_Os11g02200
OsAffx.18634.1.S1_at--306--731Chr11:617746..617770 (25 bp)
ATGTACCCCGTCTCATATGGCAAAT
LOC_Os11g02200
OsAffx.18634.1.S1_at--565--2512Chr12:655832..655856 (25 bp)
AACATTGTCTTGTCTTTGACTTCTA
LOC_Os12g02150
OsAffx.18634.1.S1_at--933--10752Chr12:655847..655871 (25 bp)
TTGACTTCTAGTTTGCTGTTGCTGG
LOC_Os12g02150
OsAffx.18634.1.S1_at--1095--932Chr12:655892..655916 (25 bp)
AGGAATGCTTTCTTCTTACGGCTGA
LOC_Os12g02150
OsAffx.18634.1.S1_at--440--2271Chr11:617867..617891 (25 bp)
AAATCTTCTAGCTAACTTTCCTATG
LOC_Os11g02200
Target Sequence 
AAACCATTCTTTCTTGGTCGCTCCATACTATTCTTGGGTTAGGTTACCTCACACACACGTTTCATGACATCCCTTGCTAG
AGGACTAACGCTTCAATTCTACTGCTTAATTCCTGCTACGAGCCCCATGTACCCCGTCTCATATGGCAAATCACAACATT
GTCTTGTCTTTGACTTCTAGTTTGCTGTTGCTGGATATGGAAGCTAGCGATTCTAGGAATGCTTTCTTCTTACGGCTGAA
AAAAAAGAAATCTTCTAGCTAACTTTCCTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18634.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis