Browse Element(s) Details


OsAffx.18657.3.S1_s_at

Description tigr:9639.m00301
TID=OsAffx.18657.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0392011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03860Os.50555.1.S2_at11/1111+1537545..1540255D-mannose binding lectin family protein, expressed
LOC_Os11g03860Os.50555.1.S1_at11/1111+1537545..1540255D-mannose binding lectin family protein, expressed
LOC_Os11g03870OsAffx.18656.1.S1_at11/1111+1542513..1542918hypothetical protein
LOC_Os11g03880OsAffx.31567.1.S1_at11/1111+1545093..1547579D-mannose binding lectin family protein
LOC_Os11g03890Os.22510.1.A1_at9/1111+1550992..1553325heterogeneous nuclear ribonucleoprotein, putative, expressed
LOC_Os11g03900Os.18609.1.S1_at11/1111+1553678..1558820glucosamine-fructose-6-phosphate aminotransferase, isomerizing family protein, expressed
LOC_Os11g03900Os.50822.1.S1_at11/1111+1553678..1558820glucosamine-fructose-6-phosphate aminotransferase, isomerizing family protein, expressed
LOC_Os11g03910Os.24473.1.A1_s_at11/1111+1561203..1564094zinc finger family protein, putative, expressed
LOC_Os11g03920OsAffx.18657.3.S1_s_at11/1111+1564342..1565323expressed protein
LOC_Os11g03930OsAffx.30805.1.S1_at10/1111+1566814..1568278hypothetical protein
LOC_Os11g03940OsAffx.19542.3.S1_x_at7/1111+1571289..1583920retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03940OsAffx.7477.1.S1_at3/1111+1571289..1583920retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03940OsAffx.9949.1.S1_at1/1111+1571289..1583920retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03950Os.47463.1.S1_x_at6/1111+1588877..1591084transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g03950Os.14491.2.S1_x_at4/1111+1588877..1591084transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18657.3.S1_s_at--495--8331Chr11:1565214..1565238 (25 bp)
GGCTCCAATCACACAGACCAGATGA
LOC_Os11g03920
OsAffx.18657.3.S1_s_at--536--2191Chr11:1565204..1565228 (25 bp)
ACACAGACCAGATGATGGCCGCGGC
LOC_Os11g03920
OsAffx.18657.3.S1_s_at--1093--2212Chr12:1510186..1510207 (22 bp)
ACAAGGACCTGCTATTCTCGTATAA
NONE
OsAffx.18657.3.S1_s_at--433--4032Chr12:1510168..1510192 (25 bp)
CGTATAATATAGCTGTGGACCGATC
NONE
OsAffx.18657.3.S1_s_at--786--2271Chr11:1564572..1564596 (25 bp)
AAATCTGCTGCTAGTGTAGGCCTTC
LOC_Os11g03920
OsAffx.18657.3.S1_s_at--436--10072Chr12:1510107..1510130 (24 bp)
TAGTGTAGGCCTTCAGCTTCCAGAT
NONE
OsAffx.18657.3.S1_s_at--1069--4912Chr12:1510092..1510116 (25 bp)
GCTTCCAGATGTCTATCAGGCGTGA
NONE
OsAffx.18657.3.S1_s_at--879--891Chr11:1564529..1564553 (25 bp)
AGGCGTGAGGAACTTCATTTTTGCA
LOC_Os11g03920
OsAffx.18657.3.S1_s_at--603--2292Chr12:1510049..1510073 (25 bp)
AAATGTGCAATCTTTGGTACTGCCT
NONE
OsAffx.18657.3.S1_s_at--546--10532Chr12:1510040..1510060 (21 bp)
TTGGTACTGCCTTTTAGCGACGATT
NONE
OsAffx.18657.3.S1_s_at--984--1631Chr11:1564475..1564499 (25 bp)
AGCGACGATTTTCTTCCAGAAGCTT
LOC_Os11g03920
Target Sequence 
GGCTCCAATCACACAGACCAGATGATGGCCGCGGCGGCCGTCTACCGGCGGGTGCTCAAGGCGGTGCAGAAGCACGTCGG
CGGGGGCGACTCCAAGAAGCACTTCCGCGAGTTCGTCGCCTCCGAGTTCCGCCGCCCCACTGGCACGGACGCCGACGCCA
GAGCGCGGCTGCGGCTCGCCGGGGATTACACCTACCTCCTCGCCAGCGTCCACCACCACAAGGACCTGCTATTCTCGTAT
AATATAGCTGTGGACCGATCAGAGGAGATGAAGAAGATATTGAACAAATCTGCTGCTAGTGTAGGCCTTCAGCTTCCAGA
TGTCTATCAGGCGTGAGGAACTTCATTTTTGCAGAAATGTGCAATCTTTGGTACTGCCTTTTAGCGACGATTTTCTTCCA
GAAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18657.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis