Browse Element(s) Details


OsAffx.18709.1.S1_at

Description tigr:9639.m00591
TID=OsAffx.18709.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to nuclear receptor binding factor-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0659011/11trans-2-enoyl-CoA reductase, mitochondrial precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06570OsAffx.30844.1.S1_at11/1111+3155631..3171761transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g06570Os.23721.1.S1_s_at11/1111+3155631..3171761transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g06570Os.14491.2.S1_x_at6/1111+3155631..3171761transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g06570Os.47463.1.S1_x_at3/1111+3155631..3171761transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g06580OsAffx.7021.1.S1_at11/1111+3174948..3176057F-box domain containing protein
LOC_Os11g06590OsAffx.18709.1.S1_at11/1111+3179297..3179939trans-2-enoyl-CoA reductase, mitochondrial precursor, putative
LOC_Os11g06600Os.46012.3.S1_x_at8/1111+3183767..3188285retrotransposon protein, putative, unclassified, expressed
LOC_Os11g06600Os.46012.2.S1_x_at7/1111+3183767..3188285retrotransposon protein, putative, unclassified, expressed
LOC_Os11g06600Os.27088.1.A1_x_at3/1111+3183767..3188285retrotransposon protein, putative, unclassified, expressed
LOC_Os11g06610OsAffx.7022.1.S1_at11/1111+3190193..319111160 kDa jasmonate-induced protein, putative
LOC_Os11g06620Os.47463.1.S1_x_at5/1111+3194553..3206778transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06620Os.14491.2.S1_x_at5/1111+3194553..3206778transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06620OsAffx.380.1.S1_at2/1111+3194553..3206778transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18709.1.S1_at--1153--4551Chr11:3179572..3179596 (25 bp)
GCGCCCAGGATGCTCCAAGACTCGA
LOC_Os11g06590
OsAffx.18709.1.S1_at--532--4551Chr11:3179570..3179594 (25 bp)
GCCCAGGATGCTCCAAGACTCGACG
LOC_Os11g06590
OsAffx.18709.1.S1_at--232--991Chr11:3179566..3179590 (25 bp)
AGGATGCTCCAAGACTCGACGCTGC
LOC_Os11g06590
OsAffx.18709.1.S1_at--219--6351Chr11:3179564..3179588 (25 bp)
GATGCTCCAAGACTCGACGCTGCCA
LOC_Os11g06590
OsAffx.18709.1.S1_at--1121--9091Chr11:3179562..3179586 (25 bp)
TGCTCCAAGACTCGACGCTGCCATG
LOC_Os11g06590
OsAffx.18709.1.S1_at--272--4791Chr11:3179546..3179570 (25 bp)
GCTGCCATGGCGTTCAATCCGCTCA
LOC_Os11g06590
OsAffx.18709.1.S1_at--415--9191Chr11:3179544..3179568 (25 bp)
TGCCATGGCGTTCAATCCGCTCAGC
LOC_Os11g06590
OsAffx.18709.1.S1_at--373--871Chr11:3179540..3179564 (25 bp)
ATGGCGTTCAATCCGCTCAGCTCGA
LOC_Os11g06590
OsAffx.18709.1.S1_at--670--4531Chr11:3179514..3179538 (25 bp)
GCCGCCATGGCTCTCGCGGACATGG
LOC_Os11g06590
OsAffx.18709.1.S1_at--1003--4551Chr11:3179486..3179510 (25 bp)
GCGCCACAACCGGACAACACGAGGC
LOC_Os11g06590
OsAffx.18709.1.S1_at--342--4291Chr11:3179325..3179478 (25 bp)
CCTCCGCATGCTACGCAGGAGGCGG
LOC_Os11g06590
Target Sequence 
GCGCCCAGGATGCTCCAAGACTCGACGCTGCCATGGCGTTCAATCCGCTCAGCTCGACGCCGCCATGGCTCTCGCGGACA
TGGCCGGCGCCACAACCGGACAACACGAGGCCTCGCCGCCTCCGCATGCTACGCAGGAGGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18709.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis