Browse Element(s) Details


OsAffx.18741.1.S1_at

Description tigr:9639.m00752
TID=OsAffx.18741.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=C2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0809011/11Armadillo/beta-catenin-like repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08060Os.33601.3.S1_x_at2/1111+4203932..4206883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08060OsAffx.20631.1.S1_x_at2/1111+4203932..4206883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08060Os.49936.2.A1_at1/1111+4203932..4206883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08070OsAffx.30873.1.S1_at11/1111+4208071..4209931hypothetical protein
LOC_Os11g08080Os.8874.1.S1_at11/1111+4216741..4225344SWIRM domain containing protein, expressed
LOC_Os11g08090Os.18349.1.A1_s_at11/1111+4230404..4239219Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os11g08090OsAffx.18741.1.S1_at11/1111+4230404..4239219Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os11g08100Os.10861.1.S1_at11/1111+4243212..4247703Eukaryotic aspartyl protease family protein, expressed
LOC_Os11g08110NANA11+4249786..42505863-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os11g08120NANA11+4258810..4261206Cyanogenic beta-glucosidase precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18741.1.S1_at--844--631Chr11:4238226..4238250 (25 bp)
ATGCTTACCTGGTTGCCTGACAGTG
LOC_Os11g08090
OsAffx.18741.1.S1_at--349--9191Chr11:4238239..4238263 (25 bp)
TGCCTGACAGTGACCATCTTACGTG
LOC_Os11g08090
OsAffx.18741.1.S1_at--610--5571Chr11:4238250..4238274 (25 bp)
GACCATCTTACGTGGGAATAACTTA
LOC_Os11g08090
OsAffx.18741.1.S1_at--289--6091Chr11:4238289..4238313 (25 bp)
GAGTACAAATGCATTTTGCTGCCTG
LOC_Os11g08090
OsAffx.18741.1.S1_at--386--9171Chr11:4238308..4238332 (25 bp)
TGCCTGCAAATAGGAAATGGGCCCC
LOC_Os11g08090
OsAffx.18741.1.S1_at--687--1051Chr11:4238575..4238599 (25 bp)
AGGTGGTTAACAATAGCATCTGCCC
LOC_Os11g08090
OsAffx.18741.1.S1_at--1023--271Chr11:4238587..4238611 (25 bp)
ATAGCATCTGCCCAGTATGGAATGA
LOC_Os11g08090
OsAffx.18741.1.S1_at--1108--6131Chr11:4238610..4238634 (25 bp)
GAGGGTTTCACTTGGTTATTTGATA
LOC_Os11g08090
OsAffx.18741.1.S1_at--101--8591Chr11:4238622..4238646 (25 bp)
TGGTTATTTGATATCCCACCAAAGG
LOC_Os11g08090
OsAffx.18741.1.S1_at--43--6971Chr11:4238978..4239002 (25 bp)
GTAGCAGTGCTGATTTGCCTATCGC
LOC_Os11g08090
OsAffx.18741.1.S1_at--1145--3851Chr11:4238987..4239011 (25 bp)
CTGATTTGCCTATCGCCAATGTTAT
LOC_Os11g08090
Target Sequence 
ATGCTTACCTGGTTGCCTGACAGTGACCATCTTACGTGGGAATAACTTAAAGCAGACAATGGGGAGTACAAATGCATTTT
GCTGCCTGCAAATAGGAAATGGGCCCCCAAGGCAAACTAAGGTGGTTAACAATAGCATCTGCCCAGTATGGAATGAGGGT
TTCACTTGGTTATTTGATATCCCACCAAAGGGGCAGAAGCTATACATCTTGTGCAAAAGCAAAAACACGTTTGGAAAGTC
GACACTCGGTCGAGTCACCATCCAGATCGACAACGTTGTCACCGAGGGTGTATACAGTGGTTTCTTCAGCCTTAAACATG
ATGGTGGCAAGGATGGCTCGAGAACCCTAGAGATAGAGATTGTATGGTCTAATAGGCCATCCAATGACAATATGTAGCAG
TGCTGATTTGCCTATCGCCAATGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18741.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis