Browse Element(s) Details


OsAffx.18758.1.S1_at

Description tigr:9639.m00859
TID=OsAffx.18758.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 24606-21623
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0911011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09089NANA11+4823274..4823704NA
LOC_Os11g09100OsAffx.18757.1.S1_at9/1111+4826099..4827968hypothetical protein
LOC_Os11g09110OsAffx.18758.1.S1_at11/1111+4846957..4848840Leucine Rich Repeat family protein
LOC_Os11g09120Os.35344.18.S1_x_at10/1111+4851589..4854624hypothetical protein
LOC_Os11g09120Os.35344.3.S1_x_at8/1111+4851589..4854624hypothetical protein
LOC_Os11g09120OsAffx.22940.5.S1_x_at3/1111+4851589..4854624hypothetical protein
LOC_Os11g09120OsAffx.22940.5.S1_at2/1111+4851589..4854624hypothetical protein
LOC_Os11g09130NANA11+4856696..4858627Leucine Rich Repeat family protein, expressed
LOC_Os11g09140Os.24105.1.A1_at11/1111+4862278..4867304Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18758.1.S1_at--1162--6491Chr11:4848241..4848265 (25 bp)
GATATCCCAAGTTCATTTTCTGACA
LOC_Os11g09110
OsAffx.18758.1.S1_at--584--7091Chr11:4848339..4848363 (25 bp)
GTCACTGAAGCTCTGCTACTTAGGT
LOC_Os11g09110
OsAffx.18758.1.S1_at--178--8631Chr11:4848384..4848408 (25 bp)
TGGTGTGATTCCATCGTCGATCAGC
LOC_Os11g09110
OsAffx.18758.1.S1_at--659--9111Chr11:4848410..4848434 (25 bp)
TGCTGCAGTCTCTGATCACCATTGA
LOC_Os11g09110
OsAffx.18758.1.S1_at--855--1231Chr11:4848491..4848515 (25 bp)
AGTTGGAGCGTCTTGATCTTTCAAA
LOC_Os11g09110
OsAffx.18758.1.S1_at--658--2531Chr11:4848517..4848541 (25 bp)
AACTACTTGTCAGGTCAGGTGCCAT
LOC_Os11g09110
OsAffx.18758.1.S1_at--718--4411Chr11:4848537..4848561 (25 bp)
GCCATCCTCAGTTGCAAACCTGGAA
LOC_Os11g09110
OsAffx.18758.1.S1_at--340--1391Chr11:4848585..4848609 (25 bp)
AGACAATAACCTTTCCGGACCATTG
LOC_Os11g09110
OsAffx.18758.1.S1_at--738--911Chr11:4848702..4848726 (25 bp)
AGGCTCCCAGGATGATTTCAGATCA
LOC_Os11g09110
OsAffx.18758.1.S1_at--976--5051Chr11:4848739..4848763 (25 bp)
GCAGCAGCTTCTTTTGTACTTGGAT
LOC_Os11g09110
OsAffx.18758.1.S1_at--93--6571Chr11:4848761..4848785 (25 bp)
GATTCAGCTTGTCCTTCTATTGGGC
LOC_Os11g09110
Target Sequence 
GATATCCCAAGTTCATTTTCTGACATGTCAGCCCTGGAAATACTTAACCTGAGTCATAACTCATTCACTGGAGAACTACC
TTTCACAAATTCTACTCAGTCACTGAAGCTCTGCTACTTAGGTTTGCATGGCAACAAGCTCAATGGTGTGATTCCATCGT
CGATCAGCTTGCTGCAGTCTCTGATCACCATTGATCTGGGGAACAATGAGTTGATTGGAATTATCCCCACAAACATTGGA
ACCTTTCTGAAGTTGGAGCGTCTTGATCTTTCAAAAAACTACTTGTCAGGTCAGGTGCCATCCTCAGTTGCAAACCTGGA
AAGATTAATGTGTCTATTCCTTTCAGACAATAACCTTTCCGGACCATTGCCTGAGCTACCTAAATGGGTGATGGTCAATG
TAACTGGAAATCCAGGCATCATACTAGACACGGAAGAAAATAGAACTTCAGGCAGTATGAAAGGCTCCCAGGATGATTTC
AGATCAGCTATATGGGTCGCAGCAGCTTCTTTTGTACTTGGATTCAGCTTGTCCTTCTATTGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18758.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis