Browse Element(s) Details


OsAffx.18757.1.S1_at

Description tigr:9639.m00858
TID=OsAffx.18757.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g091009/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09030Os.51516.1.S1_at10/1111+4801112..4802662expressed protein
LOC_Os11g09040Os.51173.1.S1_at11/1111+4803347..4804519expressed protein
LOC_Os11g09050OsAffx.8277.2.S1_at10/1111+4806173..4808135hypothetical protein
LOC_Os11g09050OsAffx.29482.5.S1_x_at4/1111+4806173..4808135hypothetical protein
LOC_Os11g09050OsAffx.29482.3.S1_x_at2/1111+4806173..4808135hypothetical protein
LOC_Os11g09050OsAffx.25135.2.S1_x_at1/1111+4806173..4808135hypothetical protein
LOC_Os11g09060NANA11+4808948..4809909hypothetical protein
LOC_Os11g09070OsAffx.18756.1.S1_at11/1111+4814077..4817486hypothetical protein
LOC_Os11g09080OsAffx.30894.1.S1_at11/1111+4817864..4818233hypothetical protein
LOC_Os11g09089NANA11+4823274..4823704NA
LOC_Os11g09100OsAffx.18757.1.S1_at9/1111+4826099..4827968hypothetical protein
LOC_Os11g09110OsAffx.18758.1.S1_at11/1111+4846957..4848840Leucine Rich Repeat family protein
LOC_Os11g09120Os.35344.18.S1_x_at10/1111+4851589..4854624hypothetical protein
LOC_Os11g09120Os.35344.3.S1_x_at8/1111+4851589..4854624hypothetical protein
LOC_Os11g09120OsAffx.22940.5.S1_x_at3/1111+4851589..4854624hypothetical protein
LOC_Os11g09120OsAffx.22940.5.S1_at2/1111+4851589..4854624hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18757.1.S1_at--799--4151Chr11:4827890..4827914 (25 bp)
CGCGCCGAGTTGGAAGTGGCAATCA
LOC_Os11g09100
OsAffx.18757.1.S1_at--673--2871Chr11:4827877..4827901 (25 bp)
AAGTGGCAATCAAGGGCACTCTCGC
LOC_Os11g09100
OsAffx.18757.1.S1_at--1144--3071Chr11:4827870..4827894 (25 bp)
AATCAAGGGCACTCTCGCCGTGCAG
LOC_Os11g09100
OsAffx.18757.1.S1_at--520--5231Chr11:4827835..4827859 (25 bp)
GAATCACATGTACGATCATGGCGTA
LOC_Os11g09100
OsAffx.18757.1.S1_at--954--851Chr11:4827818..4827842 (25 bp)
ATGGCGTACCTTGCATTTACATGGT
LOC_Os11g09100
OsAffx.18757.1.S1_at--1126--9851Chr11:4827801..4827825 (25 bp)
TACATGGTCGACAGTCGTCCTCTTG
LOC_Os11g09100
OsAffx.18757.1.S1_at--576--1151Chr11:4827789..4827813 (25 bp)
AGTCGTCCTCTTGGGCGGCTACGTC
LOC_Os11g09100
OsAffx.18757.1.S1_at--972--991Chr11:4827748..4827772 (25 bp)
AGGATTTCCAGTGCTTAACAGTAAT
LOC_Os11g09100
OsAffx.18757.1.S1_at--966--131NONE
ATTACTGTTATAGAGGCAACCAGCT
NONE
OsAffx.18757.1.S1_at--630--8231NONE
GGCAACCAGCTTGTCGAACATAGAT
NONE
OsAffx.18757.1.S1_at--1002--5551Chr11:4826149..4826173 (25 bp)
GAAAGAGCCTACTGCTTGGTGCCTG
LOC_Os11g09100
Target Sequence 
CGCGCCGAGTTGGAAGTGGCAATCAAGGGCACTCTCGCCGTGCAGGCCTACATCAGAATCACATGTACGATCATGGCGTA
CCTTGCATTTACATGGTCGACAGTCGTCCTCTTGGGCGGCTACGTCAGCTCGCTGCAGAGAAAGGATTTCCAGTGCTTAA
CAGTAATTACTGTTATAGAGGCAACCAGCTTGTCGAACATAGATATGCAAGAAAGAGCCTACTGCTTGGTGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18757.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis