Browse Element(s) Details


Os.51516.1.S1_at

Description gb:AK111008.1
DB_XREF= gi:32996217
TID=Os.51516.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51516 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-F07, full insert sequence.
FL= gb:AK111008.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0903010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09000Os.20602.2.S1_x_at11/1111+4776038..4778212hAT family dimerisation domain containing protein
LOC_Os11g09010Os.18467.1.S1_s_at11/1111+4781030..4785281Lipase family protein, expressed
LOC_Os11g09010Os.18467.1.S1_at11/1111+4781030..4785281Lipase family protein, expressed
LOC_Os11g09020Os.19070.1.S1_at11/1111+4795223..4797209amino acid carrier, putative, expressed
LOC_Os11g09030Os.51516.1.S1_at10/1111+4801112..4802662expressed protein
LOC_Os11g09040Os.51173.1.S1_at11/1111+4803347..4804519expressed protein
LOC_Os11g09050OsAffx.8277.2.S1_at10/1111+4806173..4808135hypothetical protein
LOC_Os11g09050OsAffx.29482.5.S1_x_at4/1111+4806173..4808135hypothetical protein
LOC_Os11g09050OsAffx.29482.3.S1_x_at2/1111+4806173..4808135hypothetical protein
LOC_Os11g09050OsAffx.25135.2.S1_x_at1/1111+4806173..4808135hypothetical protein
LOC_Os11g09060NANA11+4808948..4809909hypothetical protein
LOC_Os11g09070OsAffx.18756.1.S1_at11/1111+4814077..4817486hypothetical protein
LOC_Os11g09080OsAffx.30894.1.S1_at11/1111+4817864..4818233hypothetical protein
LOC_Os11g09089NANA11+4823274..4823704NA
LOC_Os11g09100OsAffx.18757.1.S1_at9/1111+4826099..4827968hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51516.1.S1_at--100--9332Chr01:30783959..30784422 (25 bp)
TCGCCACGTGCTCGTACCGGTGTGT
NONE
Os.51516.1.S1_at--1058--4211NONE
CCGACTCCTGAAACTCACTTGTTAA
NONE
Os.51516.1.S1_at--163--4691Chr11:4801456..4801480 (25 bp)
GCGGAATTAAATTCGATGACTCCAT
LOC_Os11g09030
Os.51516.1.S1_at--816--5711Chr11:4801439..4801463 (25 bp)
GACTCCATGTACAGATCGATTCAAA
LOC_Os11g09030
Os.51516.1.S1_at--378--5231Chr11:4801389..4801413 (25 bp)
GAATTTGATATGGTCTTGCGCCTAT
LOC_Os11g09030
Os.51516.1.S1_at--921--8591Chr11:4801379..4801403 (25 bp)
TGGTCTTGCGCCTATGCATGAATGC
LOC_Os11g09030
Os.51516.1.S1_at--119--3851Chr11:4801341..4801365 (25 bp)
CTGCTTGGTACACTGAAACTGCAAG
LOC_Os11g09030
Os.51516.1.S1_at--1061--1411Chr11:4801304..4801328 (25 bp)
AGAAAGGGTGCAACCTATTGCAGTT
LOC_Os11g09030
Os.51516.1.S1_at--603--5191Chr11:4801247..4801271 (25 bp)
GAATTAAGATTTGTCCTACACCTTT
LOC_Os11g09030
Os.51516.1.S1_at--1080--6471Chr11:4801240..4801264 (25 bp)
GATTTGTCCTACACCTTTTTTGTAT
LOC_Os11g09030
Os.51516.1.S1_at--212--8131Chr11:4801131..4801155 (25 bp)
GGACAGTGTCATACACAAATGGTCA
LOC_Os11g09030
Target Sequence 
TCGCCACGTGCTCGTACCGGTGTGTCCGGAGGCGCGCCGCCGACCGGCAGGCCATGGGCTCCGCCGCCGTGGCGCCGGCG
GCCACCGGCAGCATGCGCTCGTGCGCCGACTCCTGAAACTCACTTGTTAATTAGAGTTATTCAAGACGCAAATGAAGGTG
ATGAGGGCGGAATTAAATTCGATGACTCCATGTACAGATCGATTCAAATTGGAGGATAGCAAAGTATTTGGATGAATTTG
ATATGGTCTTGCGCCTATGCATGAATGCAGATATAAGCCCCCTGCTTGGTACACTGAAACTGCAAGGAAATGATGAAAAG
AAAGGGTGCAACCTATTGCAGTTTCAAAGCAAAATGCGAATGAACAGTTCATCTTGAATTAAGATTTGTCCTACACCTTT
TTTGTATTTTTGGAAGTATGACTTGAAAAGTTGAAGTAATCTTGTTTGTATTCTGAGAAGGTGGAAGTGATGATCTCATA
GATGATGGATAGGACAGTGTCATACACAAATGGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51516.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis