Browse Element(s) Details


Os.18467.1.S1_s_at

Description gb:CB663469
DB_XREF= gi:29667194
DB_XREF=OSJNEd08H16.r
CLONE=OSJNEd08H16
TID=Os.18467.1
CNT=14
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.18467 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_190811.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0901011/11Lipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08970NANA11+4756706..4757038hypothetical protein
LOC_Os11g08980OsAffx.18754.1.S1_at11/1111+4757924..4766984preprotein translocase secA family protein, putative, expressed
LOC_Os11g08990OsAffx.30774.1.S1_s_at11/1111+4772657..4773726hypothetical protein
LOC_Os11g09000Os.20602.2.S1_x_at11/1111+4776038..4778212hAT family dimerisation domain containing protein
LOC_Os11g09010Os.18467.1.S1_s_at11/1111+4781030..4785281Lipase family protein, expressed
LOC_Os11g09010Os.18467.1.S1_at11/1111+4781030..4785281Lipase family protein, expressed
LOC_Os11g09020Os.19070.1.S1_at11/1111+4795223..4797209amino acid carrier, putative, expressed
LOC_Os11g09030Os.51516.1.S1_at10/1111+4801112..4802662expressed protein
LOC_Os11g09040Os.51173.1.S1_at11/1111+4803347..4804519expressed protein
LOC_Os11g09050OsAffx.8277.2.S1_at10/1111+4806173..4808135hypothetical protein
LOC_Os11g09050OsAffx.29482.5.S1_x_at4/1111+4806173..4808135hypothetical protein
LOC_Os11g09050OsAffx.29482.3.S1_x_at2/1111+4806173..4808135hypothetical protein
LOC_Os11g09050OsAffx.25135.2.S1_x_at1/1111+4806173..4808135hypothetical protein
LOC_Os11g09060NANA11+4808948..4809909hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0006952biological_processdefense response
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0009862biological_processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0004806molecular_functiontriacylglycerol lipase activity
GO:0004871molecular_functionsignal transducer activity
GO:0005515molecular_functionprotein binding
GO:0016298molecular_functionlipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18467.1.S1_s_at--34--6031Chr11:4784777..4784801 (25 bp)
GAGAGTGCCAAGAGCGAACGCGACA
LOC_Os11g09010
Os.18467.1.S1_s_at--820--4391Chr11:4784783..4784807 (25 bp)
GCCAAGAGCGAACGCGACATGACAT
LOC_Os11g09010
Os.18467.1.S1_s_at--412--991Chr11:4784874..4784898 (25 bp)
AGGAGGTCTCCATTGATGTCGTTGC
LOC_Os11g09010
Os.18467.1.S1_s_at--680--9231Chr11:4784882..4784906 (25 bp)
TCCATTGATGTCGTTGCGCCACAGT
LOC_Os11g09010
Os.18467.1.S1_s_at--579--771Chr11:4784889..4784913 (25 bp)
ATGTCGTTGCGCCACAGTCGAGCTA
LOC_Os11g09010
Os.18467.1.S1_s_at--1161--8191Chr11:4784934..4784958 (25 bp)
GGAATGAGCTCAAGCTCCGGGAAGA
LOC_Os11g09010
Os.18467.1.S1_s_at--306--6791Chr11:4785028..4785052 (25 bp)
GTTAGTTTGTTGAGCATTTGTCATC
LOC_Os11g09010
Os.18467.1.S1_s_at--68--5931Chr11:4785039..4785063 (25 bp)
GAGCATTTGTCATCTAGTTTAGGCA
LOC_Os11g09010
Os.18467.1.S1_s_at--606--211Chr11:4785043..4785067 (25 bp)
ATTTGTCATCTAGTTTAGGCACAGA
LOC_Os11g09010
Os.18467.1.S1_s_at--599--5111Chr11:4785061..4785085 (25 bp)
GCACAGATGAATGAATGTTAGCAAC
LOC_Os11g09010
Os.18467.1.S1_s_at--621--711Chr11:4785136..4785160 (25 bp)
ATGATGTATCTGTTCTTCATGTTGA
LOC_Os11g09010
Target Sequence 
GAGAGTGCCAAGAGCGAACGCGACATGACATCGCTGGCGAGGATGCTGGAGGACTTGCACAAGTTTGAGCGCCATTCCAG
CGAGCTGGTGGAGAACAAGGAGGTCTCCATTGATGTCGTTGCGCCACAGTCGAGCTACTCCCTGTGGGTGAAGGAGTGGA
ATGAGCTCAAGCTCCGGGAAGAAGTTAGGACAATATTGTTTCAATTTTGAAGTTGAAACNCCTTAAGAAAATTTAATTAA
TTAATTAATTAGTTAGTTTGTTGAGCATTTGTCATCTAGTTTAGGCACAGATGAATGAATGTTAGCAACATAATATAGGT
GATTGTAAATAGATTTAGTCCTGGTAGAGGCATTGCATTATGATGTATCTGTTCTTCATGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18467.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis