Browse Element(s) Details


OsAffx.18754.1.S1_at

Description tigr:9639.m00846
TID=OsAffx.18754.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=preprotein translocase, SecA subunit
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0898011/11preprotein translocase secA family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08950Os.17533.1.S1_at11/1111+4730881..4734761protein kinase family protein, putative, expressed
LOC_Os11g08959NANA11+4751499..4753466NA
LOC_Os11g08970NANA11+4756706..4757038hypothetical protein
LOC_Os11g08980OsAffx.18754.1.S1_at11/1111+4757924..4766984preprotein translocase secA family protein, putative, expressed
LOC_Os11g08990OsAffx.30774.1.S1_s_at11/1111+4772657..4773726hypothetical protein
LOC_Os11g09000Os.20602.2.S1_x_at11/1111+4776038..4778212hAT family dimerisation domain containing protein
LOC_Os11g09010Os.18467.1.S1_s_at11/1111+4781030..4785281Lipase family protein, expressed
LOC_Os11g09010Os.18467.1.S1_at11/1111+4781030..4785281Lipase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006605biological_processprotein targeting
GO:0006886biological_processintracellular protein transport
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18754.1.S1_at--449--10231Chr11:4765775..4765799 (25 bp)
TTTGGCAGTCTAGGTGGAACGTTAC
LOC_Os11g08980
OsAffx.18754.1.S1_at--397--8191Chr11:4765895..4765919 (25 bp)
GGAAGACTTGCTATCATCACTTGAG
LOC_Os11g08980
OsAffx.18754.1.S1_at--1141--4411Chr11:4765973..4765997 (25 bp)
GCCAGTATCACCTAATTCATTCAGA
LOC_Os11g08980
OsAffx.18754.1.S1_at--519--1571Chr11:4766221..4766245 (25 bp)
AGCTACATACTTGGATGCTGTGCAA
LOC_Os11g08980
OsAffx.18754.1.S1_at--1011--9111Chr11:4766236..4766260 (25 bp)
TGCTGTGCAAGAGTCCCGTTATGAT
LOC_Os11g08980
OsAffx.18754.1.S1_at--497--5371Chr11:4766663..4766687 (25 bp)
GAAGACTCTTGATACTCTGTGGAAG
LOC_Os11g08980
OsAffx.18754.1.S1_at--874--10591Chr11:4766717..4766828 (25 bp)
TTCTGCGGTGAATGTGCGGAGCTTT
LOC_Os11g08980
OsAffx.18754.1.S1_at--744--8071Chr11:4766821..4766845 (25 bp)
GGAGCTTTGGACATAGAAACCCTTT
LOC_Os11g08980
OsAffx.18754.1.S1_at--710--811Chr11:4766863..4766887 (25 bp)
ATGGTTGTCGGTTCTTCATCTCGAT
LOC_Os11g08980
OsAffx.18754.1.S1_at--441--10551Chr11:4766877..4766901 (25 bp)
TTCATCTCGATGTTGGGTGCCACAC
LOC_Os11g08980
OsAffx.18754.1.S1_at--1110--3071Chr11:4766917..4766941 (25 bp)
AATCACTACTCCATTACTGGTCATC
LOC_Os11g08980
Target Sequence 
TTTGGCAGTCTAGGTGGAACGTTACTTGATGAACCATTCAAGGAAATTCAAGAGGAAGACTTGCTATCATCACTTGAGCA
AATTCATGAATATGGCCCTGTGAATGTTGATAATTTTACTCTTCCAAATATGCCAGTATCACCTAATTCATTCAGAGGAA
TCTGGAAGAGAACATCTTCAATGATGCGGTGGCTTGCCATATGTGTTGATGATGCATCGAAGAAAGGAAGATACACGTAC
ATTGTCAATATGCTTCGCAAATATTTTGGGGATTTTCTAATAGCTACATACTTGGATGCTGTGCAAGAGTCCCGTTATGA
TGATGCATACATTCGAGGAATTGAGAGGGAAATACTACTGAAGACTCTTGATACTCTGTGGAAGGACCATTTGGTGAACA
TGAACAAGCTTAGTTCTGCGGTGAATGTGCGGAGCTTTGGACATAGAAACCCTTTAGAAGAATACAAGATTGATGGTTGT
CGGTTCTTCATCTCGATGTTGGGTGCCACACGGAGATTGACAGTGGAATCACTACTCCATTACTGGTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18754.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis