Browse Element(s) Details


Os.17533.1.S1_at

Description gb:AK072656.1
DB_XREF= gi:32982679
TID=Os.17533.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.17533 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023133C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133C01, full insert sequence.
FL= gb:AK072656.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0895011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08889OsAffx.1196.1.S1_at3/1111+4705407..4706564hypothetical protein
LOC_Os11g08889OsAffx.1196.1.S1_x_at1/1111+4705407..4706564hypothetical protein
LOC_Os11g08900OsAffx.7657.1.S1_x_at1/1111+4707510..4708568hypothetical protein
LOC_Os11g08909Os.9658.1.S1_at10/1111+4710246..4711282expressed protein
LOC_Os11g08909OsAffx.18753.3.S1_x_at1/1111+4710246..4711282expressed protein
LOC_Os11g08918OsAffx.18753.1.S1_at11/1111+4711866..4714362hypothetical protein
LOC_Os11g08918OsAffx.19202.1.S1_at1/1111+4711866..4714362hypothetical protein
LOC_Os11g08930Os.8169.1.S1_at10/1111+4719782..4721025expressed protein
LOC_Os11g08940Os.23150.1.S1_at11/1111+4727879..4729987DNA-directed RNA polymerase II 8.2 kDa polypeptide, putative, expressed
LOC_Os11g08950Os.17533.1.S1_at11/1111+4730881..4734761protein kinase family protein, putative, expressed
LOC_Os11g08959NANA11+4751499..4753466NA
LOC_Os11g08970NANA11+4756706..4757038hypothetical protein
LOC_Os11g08980OsAffx.18754.1.S1_at11/1111+4757924..4766984preprotein translocase secA family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17533.1.S1_at--552--4011Chr11:4731508..4731527 (20 bp)
CGTCCTCACATTGCAGTTGTTCTGA
LOC_Os11g08950
Os.17533.1.S1_at--1063--6711Chr11:4731392..4731416 (25 bp)
GTTCTGAAGCTACTTAACGGCGACA
LOC_Os11g08950
Os.17533.1.S1_at--7--5451Chr11:4731308..4731332 (25 bp)
GAACCTGTGGTTACACTGCCAGAGA
LOC_Os11g08950
Os.17533.1.S1_at--1089--5951Chr11:4731287..4731311 (25 bp)
GAGAATAACCGCAACATCCAGTCCT
LOC_Os11g08950
Os.17533.1.S1_at--1033--3451Chr11:4731269..4731293 (25 bp)
CAGTCCTACATCAATCTTGCATTCG
LOC_Os11g08950
Os.17533.1.S1_at--608--6271Chr11:4731245..4731269 (25 bp)
GATGTCGATGACGATTCTGCCTCTG
LOC_Os11g08950
Os.17533.1.S1_at--784--5871Chr11:4731159..4731183 (25 bp)
GAGCCGATCGTCGAGCTTTGATTGA
LOC_Os11g08950
Os.17533.1.S1_at--1--6451Chr11:4731136..4731160 (25 bp)
GATCAGTCCATGGTATACTAGTCAT
LOC_Os11g08950
Os.17533.1.S1_at--462--2851Chr11:4731014..4731038 (25 bp)
AAGTCTGTCCTTTAATCTGATGTCT
LOC_Os11g08950
Os.17533.1.S1_at--333--8731Chr11:4730994..4731018 (25 bp)
TGTCTTAGATCTTGTTCTCCCATAA
LOC_Os11g08950
Os.17533.1.S1_at--517--6791Chr11:4730969..4730993 (25 bp)
GTTATGGGTCTGTTCTATCATCTCA
LOC_Os11g08950
Target Sequence 
CGTCCTCACATTGCAGTTGTTCTGAAGCTACTTAACGGCGACAATGGTATTCTGAAGTGGGCTAGATCAGAAGTAGGATT
GTCATACGAGAGCGATGGTGATGAACCTGTGGTTACACTGCCAGAGAATAACCGCAACATCCAGTCCTACATCAATCTTG
CATTCGATGTCGATGACGATTCTGCCTCTGTCAGCAGCAACGATTTCATCGCTGCGAACACTTCCCNTGGAAGAGTATTT
ACGAGGAAGATGGAGCCGATCGTCGAGCTTTGATTGATCAGTCCATGGTATACTAGTCATTTTTGTATAGTAGGTATAGA
TCTTTTTTCCCCTTCTTCTTAAGTTAACTTCTTTTGTTCCTTGGATGAGAAGTGGCACATGCAAAATGCCCTCCTCCAAG
TCTGTCCTTTAATCTGATGTCTTAGATCTTGTTCTCCCATAAGTTATGGGTCTGTTCTATCATCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17533.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis