Browse Element(s) Details


Os.23150.1.S1_at

Description gb:AK108801.1
DB_XREF= gi:32994010
TID=Os.23150.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23150 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-C09, full insert sequence.
FL= gb:AK108801.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0894011/11DNA-directed RNA polymerase II 8.2 kDa polypeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08889OsAffx.1196.1.S1_at3/1111+4705407..4706564hypothetical protein
LOC_Os11g08889OsAffx.1196.1.S1_x_at1/1111+4705407..4706564hypothetical protein
LOC_Os11g08900OsAffx.7657.1.S1_x_at1/1111+4707510..4708568hypothetical protein
LOC_Os11g08909Os.9658.1.S1_at10/1111+4710246..4711282expressed protein
LOC_Os11g08909OsAffx.18753.3.S1_x_at1/1111+4710246..4711282expressed protein
LOC_Os11g08918OsAffx.18753.1.S1_at11/1111+4711866..4714362hypothetical protein
LOC_Os11g08918OsAffx.19202.1.S1_at1/1111+4711866..4714362hypothetical protein
LOC_Os11g08930Os.8169.1.S1_at10/1111+4719782..4721025expressed protein
LOC_Os11g08940Os.23150.1.S1_at11/1111+4727879..4729987DNA-directed RNA polymerase II 8.2 kDa polypeptide, putative, expressed
LOC_Os11g08950Os.17533.1.S1_at11/1111+4730881..4734761protein kinase family protein, putative, expressed
LOC_Os11g08959NANA11+4751499..4753466NA

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23150.1.S1_at--385--2791Chr11:4727918..4727942 (25 bp)
AAGATGATCATACCAGTGCGCTGCT
LOC_Os11g08940
Os.23150.1.S1_at--955--1751Chr11:4727945..4728116 (25 bp)
ACCTGCGGCAAGGTGATCGGCAACA
LOC_Os11g08940
Os.23150.1.S1_at--253--7991Chr11:4729494..4729518 (25 bp)
GGATGCTCTGGATGCTTTGGGCTTA
LOC_Os11g08940
Os.23150.1.S1_at--840--6331Chr11:4729504..4729528 (25 bp)
GATGCTTTGGGCTTAGTCCGTTACT
LOC_Os11g08940
Os.23150.1.S1_at--811--10051Chr11:4729517..4729541 (25 bp)
TAGTCCGTTACTGCTGTAGGCGAAT
LOC_Os11g08940
Os.23150.1.S1_at--485--8051Chr11:4729685..4729709 (25 bp)
GGAGAAGACTGAGACCACTGCTGGC
LOC_Os11g08940
Os.23150.1.S1_at--1069--4291Chr11:4729756..4729780 (25 bp)
CCTTTAGTCTAGTGTTTATGCTGTG
LOC_Os11g08940
Os.23150.1.S1_at--136--2691Chr11:4729823..4729847 (25 bp)
AAGCTGTTCTTTGCACATTAGTGAA
LOC_Os11g08940
Os.23150.1.S1_at--431--3151Chr11:4729883..4729907 (25 bp)
AATTCTCCAGCTGTGTTTCTTCTAT
LOC_Os11g08940
Os.23150.1.S1_at--5--2371Chr11:4729946..4729970 (25 bp)
AAAGCCAACTTTATTCTGAATGTCA
LOC_Os11g08940
Os.23150.1.S1_at--141--5291Chr11:4729963..4729987 (25 bp)
GAATGTCATCTCGTCATTTCACGGC
LOC_Os11g08940
Target Sequence 
AAGATGATCATACCAGTGCGCTGCTTCACCTGCGGCAAGGTGATCGGCAACAAGTGGGATCTCTACCTCGACCTCCTCCA
GGCAGACTACACCGAGGGGGATGCTCTGGATGCTTTGGGCTTAGTCCGTTACTGCTGTAGGCGAATGCTGATGACCCATG
TTGACCTCATTGAGAAGCTGCTCAACTACAACACTCTGGAGAAGACTGAGACCACTGCTGGCAATTAGATGANCCTNGCA
TACTCCACCGCTTCATTGCACCTAGTANCCTTTAGTCTAGTGTTTATGCTGTGTTTGACACATCTAAACAAACNNAGTGC
TGCTATGCTTATGCAAAAAGCTGTTCTTTGCACATTAGTGAATATGGATGGACTTGACCATTTCCNATGTACCCAGGAAT
TCTCCAGCTGTGTTTCTTCTATNNNNNNNNTNNNNNTNNNTNNNNNGTATTGACAGCTTGAAAGCCAACTTTATTCTGAA
TGTCATCTCGTCATTTCACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23150.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis