Browse Element(s) Details


Os.19070.1.S1_at

Description gb:AK068003.1
DB_XREF= gi:32978021
TID=Os.19070.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.19070 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-035-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129H02, full insert sequence.
FL= gb:AK068003.1 gb:AK104370.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0902011/11amino acid carrier, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08990OsAffx.30774.1.S1_s_at11/1111+4772657..4773726hypothetical protein
LOC_Os11g09000Os.20602.2.S1_x_at11/1111+4776038..4778212hAT family dimerisation domain containing protein
LOC_Os11g09010Os.18467.1.S1_s_at11/1111+4781030..4785281Lipase family protein, expressed
LOC_Os11g09010Os.18467.1.S1_at11/1111+4781030..4785281Lipase family protein, expressed
LOC_Os11g09020Os.19070.1.S1_at11/1111+4795223..4797209amino acid carrier, putative, expressed
LOC_Os11g09030Os.51516.1.S1_at10/1111+4801112..4802662expressed protein
LOC_Os11g09040Os.51173.1.S1_at11/1111+4803347..4804519expressed protein
LOC_Os11g09050OsAffx.8277.2.S1_at10/1111+4806173..4808135hypothetical protein
LOC_Os11g09050OsAffx.29482.5.S1_x_at4/1111+4806173..4808135hypothetical protein
LOC_Os11g09050OsAffx.29482.3.S1_x_at2/1111+4806173..4808135hypothetical protein
LOC_Os11g09050OsAffx.25135.2.S1_x_at1/1111+4806173..4808135hypothetical protein
LOC_Os11g09060NANA11+4808948..4809909hypothetical protein
LOC_Os11g09070OsAffx.18756.1.S1_at11/1111+4814077..4817486hypothetical protein
LOC_Os11g09080OsAffx.30894.1.S1_at11/1111+4817864..4818233hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0015800biological_processacidic amino acid transport
GO:0015802biological_processbasic amino acid transport
GO:0015804biological_processneutral amino acid transport
GO:0015810biological_processL-aspartate transport
GO:0015827biological_processL-tryptophan transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0015171molecular_functionamino acid transporter activity
GO:0015172molecular_functionacidic amino acid transporter activity
GO:0015174molecular_functionbasic amino acid transporter activity
GO:0015175molecular_functionneutral amino acid transporter activity
GO:0015359molecular_functionamino acid permease activity
GO:0015399molecular_functionprimary active transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19070.1.S1_at--717--9591Chr11:4796617..4796641 (25 bp)
TCATCTCCCGGGAGCTCCGCGTGGG
LOC_Os11g09020
Os.19070.1.S1_at--14--4591Chr11:4796922..4796946 (25 bp)
GCGCTCAAGGTGTACCGGCCGTTCA
LOC_Os11g09020
Os.19070.1.S1_at--826--6971Chr11:4796933..4796957 (25 bp)
GTACCGGCCGTTCAGCGGGTAGAGA
LOC_Os11g09020
Os.19070.1.S1_at--1041--6031Chr11:4796964..4796988 (25 bp)
GAGATCGATCGGTGACCGTCCGATC
LOC_Os11g09020
Os.19070.1.S1_at--265--4251Chr11:4796979..4797003 (25 bp)
CCGTCCGATCGAAGTAGTACTAGCA
LOC_Os11g09020
Os.19070.1.S1_at--502--531Chr11:4796986..4797010 (25 bp)
ATCGAAGTAGTACTAGCACTAGCAA
LOC_Os11g09020
Os.19070.1.S1_at--138--5091Chr11:4797001..4797025 (25 bp)
GCACTAGCAAACATGTGTACGTCGT
LOC_Os11g09020
Os.19070.1.S1_at--626--2251Chr11:4797099..4797123 (25 bp)
AAATTATTTACTGAGCTTTGTGTGG
LOC_Os11g09020
Os.19070.1.S1_at--367--6951Chr11:4797145..4797169 (25 bp)
GTAGATTCTTGTATTATGAGTTTGA
LOC_Os11g09020
Os.19070.1.S1_at--698--10811Chr11:4797170..4797194 (25 bp)
TTGGGATAACAAGGCTTTAATGGTT
LOC_Os11g09020
Os.19070.1.S1_at--606--2431Chr11:4797177..4797201 (25 bp)
AACAAGGCTTTAATGGTTAGTGAAG
LOC_Os11g09020
Target Sequence 
TCATCTCCCGGGAGCTCCGCGTGGGCCCCTTCTCGCTCAGCGTGTTCCGCCTGANCATGGCGCACGGCGTTCGTNTGCGC
CACCACCGTCGTGTCCATGCTCCTCCCGTTNTTCGGCGACGTGGTGGGGCTCCTCGGCGCCGTCTCGTTCTGGCCGCTCA
CCGTNNTACTTCCCCGTCGAGATGTACATCGCGCAGCGCGGCGTGCGGCGAGGGAGCGCGCGGTGGCTCTGCCTCAAGGT
CCTCAGCGCCGCCTGCCTCGTCGTCTCCGTCGNCGCCGCCGCCGGCTCCATCGCCGACGTGGTCGACGCGCTCAAGGTGT
ACCGGCCGTTCAGCGGGTAGAGAGAATGNGAGATCGATCGGTGACCGTCCGATCGAAGTAGTACTAGCACTAGCAAACAT
GTGTACGTCGTANGGGCAGCAGAGCAACACTGCCNNTGCCAGGTGGGNCCCNAGGTGTGAGATAAAAAAGANCNANGGTA
AACAAAAAATTATTTACTGAGCTTTGTGTGGNGTTTTGTCATGTAACACCNTTGTAGATTCTTGTATTATGAGTTTGATT
GGGATAACAAGGCTTTAATGGTTAGTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19070.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis