Browse Element(s) Details


OsAffx.30894.1.S1_at

Description tigr:9639.m00856
TID=OsAffx.30894.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0908011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09020Os.19070.1.S1_at11/1111+4795223..4797209amino acid carrier, putative, expressed
LOC_Os11g09030Os.51516.1.S1_at10/1111+4801112..4802662expressed protein
LOC_Os11g09040Os.51173.1.S1_at11/1111+4803347..4804519expressed protein
LOC_Os11g09050OsAffx.8277.2.S1_at10/1111+4806173..4808135hypothetical protein
LOC_Os11g09050OsAffx.29482.5.S1_x_at4/1111+4806173..4808135hypothetical protein
LOC_Os11g09050OsAffx.29482.3.S1_x_at2/1111+4806173..4808135hypothetical protein
LOC_Os11g09050OsAffx.25135.2.S1_x_at1/1111+4806173..4808135hypothetical protein
LOC_Os11g09060NANA11+4808948..4809909hypothetical protein
LOC_Os11g09070OsAffx.18756.1.S1_at11/1111+4814077..4817486hypothetical protein
LOC_Os11g09080OsAffx.30894.1.S1_at11/1111+4817864..4818233hypothetical protein
LOC_Os11g09089NANA11+4823274..4823704NA
LOC_Os11g09100OsAffx.18757.1.S1_at9/1111+4826099..4827968hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30894.1.S1_at--15--10631Chr11:4817963..4817987 (25 bp)
TTCGAGCTGCCCATCCAGAATCGAT
LOC_Os11g09080
OsAffx.30894.1.S1_at--999--1591Chr11:4817967..4817991 (25 bp)
AGCTGCCCATCCAGAATCGATTCAT
LOC_Os11g09080
OsAffx.30894.1.S1_at--338--3411Chr11:4817978..4818126 (25 bp)
CAGAATCGATTCATTGGGCCCCAAG
LOC_Os11g09080
OsAffx.30894.1.S1_at--560--3051Chr11:4817981..4818129 (25 bp)
AATCGATTCATTGGGCCCCAAGCAG
LOC_Os11g09080
OsAffx.30894.1.S1_at--75--3231Chr11:4818123..4818147 (25 bp)
CAAGCAGCCGTTTCTTTGGAGCCGA
LOC_Os11g09080
OsAffx.30894.1.S1_at--638--1491Chr11:4818125..4818149 (25 bp)
AGCAGCCGTTTCTTTGGAGCCGAGC
LOC_Os11g09080
OsAffx.30894.1.S1_at--583--1672Chr11:4818147..4818171 (25 bp)
AGCCGCTGTGCCGAAATACTAAAGC
LOC_Os11g09080
OsAffx.30894.1.S1_at--197--3872Chr11:4818152..4818176 (25 bp)
CTGTGCCGAAATACTAAAGCCGATT
LOC_Os11g09080
OsAffx.30894.1.S1_at--590--4512Chr11:4818156..4818180 (25 bp)
GCCGAAATACTAAAGCCGATTGGGA
LOC_Os11g09080
OsAffx.30894.1.S1_at--194--9872Chr11:4818163..4818187 (25 bp)
TACTAAAGCCGATTGGGATTTGGGA
LOC_Os11g09080
OsAffx.30894.1.S1_at--316--32Chr11:4818174..4818198 (25 bp)
ATTGGGATTTGGGAGCCGCTGTTCA
LOC_Os11g09080
Target Sequence 
TTCGAGCTGCCCATCCAGAATCGATTCATTGGGCCCCAAGCAGCCGTTTCTTTGGAGCCGAGCCGCTGTGCCGAAATACT
AAAGCCGATTGGGATTTGGGAGCCGCTGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30894.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis