Browse Element(s) Details


OsAffx.18764.2.S1_at

Description tigr:9629.m01786
TID=OsAffx.18764.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1839011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18350OsAffx.11095.1.S1_at11/111+10304895..10305419hypothetical protein
LOC_Os01g18360Os.18169.2.S1_x_at11/111+10309146..10311545AUX/IAA family protein, expressed
LOC_Os01g18360Os.18169.2.S1_at10/111+10309146..10311545AUX/IAA family protein, expressed
LOC_Os01g18360Os.18169.1.S1_at8/111+10309146..10311545AUX/IAA family protein, expressed
LOC_Os01g18370OsAffx.10738.2.S1_at10/111+10312861..10315287hypothetical protein
LOC_Os01g18370OsAffx.10738.1.S1_at8/111+10312861..10315287hypothetical protein
LOC_Os01g18390OsAffx.18764.2.S1_at11/111+10330316..10334290hypothetical protein
LOC_Os01g18400Os.36593.1.S1_at11/111+10338804..1034034826 kDa endochitinase 1 precursor, putative, expressed
LOC_Os01g18400Os.36593.2.S1_x_at10/111+10338804..1034034826 kDa endochitinase 1 precursor, putative, expressed
LOC_Os01g18400Os.36593.2.S1_at8/111+10338804..1034034826 kDa endochitinase 1 precursor, putative, expressed
LOC_Os01g18410Os.9858.2.S1_x_at11/111+10343489..10346650hypothetical protein
LOC_Os01g18410Os.9858.1.S1_at3/111+10343489..10346650hypothetical protein
LOC_Os01g18420OsAffx.11096.1.S1_at11/111+10349207..10349929SRF-type transcription factor family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18764.2.S1_at--1010--6032Chr06:16386788..16386812 (25 bp)
GAGATCAAGTTCCTCCTTTACTATT
NONE
OsAffx.18764.2.S1_at--234--9255Chr06:16386801..16386820 (20 bp)
TCCTTTACTATTCTCGCAACGCGAT
NONE
OsAffx.18764.2.S1_at--553--9355Chr11:22532159..22532183 (25 bp)
TCGCAACGCGATCCTCTGTGTAAGA
NONE
OsAffx.18764.2.S1_at--891--6036Chr06:16386898..16386922 (25 bp)
GAGATCCTTTAACCCTGAATTTGAA
NONE
OsAffx.18764.2.S1_at--673--4191Chr01:10331725..10331749 (25 bp)
CCCGGTATGTTTTGCCATTGGCACA
LOC_Os01g18390
OsAffx.18764.2.S1_at--909--5353Chr06:16387049..16387523 (25 bp)
GAAGAGATGCCACTTATCATGCCAA
NONE
OsAffx.18764.2.S1_at--465--171Chr01:10331182..10331206 (25 bp)
ATTTTTTCTCCATTGCCGACATTTA
LOC_Os01g18390
OsAffx.18764.2.S1_at--722--5672Chr06:16387492..16387571 (25 bp)
GACATTTATCGTAGTGGCAGCCTGA
NONE
OsAffx.18764.2.S1_at--323--2793Chr11:22531401..22531424 (24 bp)
AAGAGTCTTTTGTCGCAGTCATCGC
NONE
OsAffx.18764.2.S1_at--425--6131Chr01:10330412..10330436 (25 bp)
GAGGGCTTTTATGTACCTTGCATCC
LOC_Os01g18390
OsAffx.18764.2.S1_at--7--10131Chr01:10330403..10330427 (25 bp)
TATGTACCTTGCATCCGAACTTGAG
LOC_Os01g18390
Target Sequence 
GAGATCAAGTTCCTCCTTTACTATTCTCGCAACGCGATCCTCTGTGTAAGAGATGTTTTGAAAAATTCTTCTGTTTCTTT
CCAACCAAACGTTCCACCAAGTGGCGAGAAGAGATCCTTTAACCCTGAATTTGAAAGGTTGTGCCCCCGGTATGTTTTGC
CATTGGCACACCATAAGCCAAACTTTTCTGAAGAAGGGGCAGACATTGAAGAGATGCCACTTATCATGCCAAAAATTTAT
TTTTTCTCCATTGCCGACATTTATCGTAGTGGCAGCCTGAAAGAGTCTTTTGTCGCAGTCATCGCAAGGAAGAGGGCTTT
TATGTACCTTGCATCCGAACTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18764.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis