Browse Element(s) Details


OsAffx.18770.1.S1_s_at

Description tigr:9639.m00932
TID=OsAffx.18770.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0987011/11hypothetical protein
LOC_Os11g2677011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09840OsAffx.7053.1.S1_at11/1111+5257617..5258948expressed protein
LOC_Os11g09850Os.53740.1.S1_s_at11/1111+5272112..5275433expressed protein
LOC_Os11g09850Os.27601.1.A1_at10/1111+5272112..5275433expressed protein
LOC_Os11g09850Os.53740.1.S1_at8/1111+5272112..5275433expressed protein
LOC_Os11g09860OsAffx.30910.2.S1_at11/1111+5275960..5276400hypothetical protein
LOC_Os11g09860OsAffx.30910.1.S1_x_at1/1111+5275960..5276400hypothetical protein
LOC_Os11g09870OsAffx.18770.1.S1_s_at11/1111+5280360..5280604hypothetical protein
LOC_Os11g09880NANA11+5285405..5285758hypothetical protein
LOC_Os11g09890OsAffx.30280.1.S1_x_at1/1111+5286708..5288095retrotransposon protein, putative, unclassified
LOC_Os11g09890OsAffx.28492.1.S1_at1/1111+5286708..5288095retrotransposon protein, putative, unclassified
LOC_Os11g09890OsAffx.27810.1.S1_x_at1/1111+5286708..5288095retrotransposon protein, putative, unclassified
LOC_Os11g09900OsAffx.23502.4.S1_at11/1111+5291426..5294636hypothetical protein
LOC_Os11g09910NANA11+5296188..5297351hypothetical protein
LOC_Os11g09919OsAffx.19542.3.S1_x_at7/1111+5300645..5311918retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09919Os.31535.1.A1_at1/1111+5300645..5311918retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09919OsAffx.28530.1.S1_at1/1111+5300645..5311918retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18770.1.S1_s_at--223--8512Chr11:14833318..14833342 (25 bp)
TGGAAGATGCTTCGATAGGTTCAGC
LOC_Os11g26770
OsAffx.18770.1.S1_s_at--678--5352Chr11:14833316..14833340 (25 bp)
GAAGATGCTTCGATAGGTTCAGCAA
LOC_Os11g26770
OsAffx.18770.1.S1_s_at--661--6332Chr11:14833313..14833337 (25 bp)
GATGCTTCGATAGGTTCAGCAACCA
LOC_Os11g26770
OsAffx.18770.1.S1_s_at--587--9072Chr11:14833311..14833335 (25 bp)
TGCTTCGATAGGTTCAGCAACCACA
LOC_Os11g26770
OsAffx.18770.1.S1_s_at--836--4892Chr11:14833310..14833334 (25 bp)
GCTTCGATAGGTTCAGCAACCACAA
LOC_Os11g26770
OsAffx.18770.1.S1_s_at--1086--10612Chr11:14833308..14833332 (25 bp)
TTCGATAGGTTCAGCAACCACAATA
LOC_Os11g26770
OsAffx.18770.1.S1_s_at--108--6492Chr11:14833305..14833329 (25 bp)
GATAGGTTCAGCAACCACAATAGCT
LOC_Os11g26770
OsAffx.18770.1.S1_s_at--410--7892Chr11:14833301..14833325 (25 bp)
GGTTCAGCAACCACAATAGCTCCAA
LOC_Os11g26770
OsAffx.18770.1.S1_s_at--330--6752Chr11:14833300..14833324 (25 bp)
GTTCAGCAACCACAATAGCTCCAAC
LOC_Os11g26770
OsAffx.18770.1.S1_s_at--1149--9652Chr11:14833298..14833322 (25 bp)
TCAGCAACCACAATAGCTCCAACAG
LOC_Os11g26770
OsAffx.18770.1.S1_s_at--550--1492Chr11:14833296..14833320 (25 bp)
AGCAACCACAATAGCTCCAACAGAG
LOC_Os11g26770
Target Sequence 
TGGAAGATGCTTCGATAGGTTCAGCAACCACAATAGCTCCAACAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18770.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis