Browse Element(s) Details


OsAffx.18784.1.S1_at

Description tigr:9639.m00999
TID=OsAffx.18784.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NBS-LRR disease resistance protein homologue
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1057011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10530OsAffx.30187.2.S1_at9/1111+5763714..5768096hypothetical protein
LOC_Os11g10530Os.55230.1.S1_at4/1111+5763714..5768096hypothetical protein
LOC_Os11g10530Os.55230.1.S1_x_at2/1111+5763714..5768096hypothetical protein
LOC_Os11g10530OsAffx.18968.1.S1_at1/1111+5763714..5768096hypothetical protein
LOC_Os11g10540OsAffx.18782.1.S1_at11/1111+5769517..5773026hypothetical protein
LOC_Os11g10550Os.50870.2.S1_at10/1111+5772483..5783307Leucine Rich Repeat family protein, expressed
LOC_Os11g10560OsAffx.18783.1.S1_at11/1111+5788060..5789251hypothetical protein
LOC_Os11g10570OsAffx.18784.1.S1_at11/1111+5792475..5797188Leucine Rich Repeat family protein
LOC_Os11g10570Os.52574.2.S1_x_at1/1111+5792475..5797188Leucine Rich Repeat family protein
LOC_Os11g10580NANA11+5799043..5801418transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10590Os.9836.1.S1_at4/1111+5804219..5804485hypothetical protein
LOC_Os11g10600OsAffx.18785.1.S1_at10/1111+5808753..5811520hypothetical protein
LOC_Os11g10600OsAffx.25936.5.S1_x_at1/1111+5808753..5811520hypothetical protein
LOC_Os11g10610OsAffx.7065.1.S1_s_at11/1111+5816301..5822197Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0009817biological_processdefense response to pathogenic fungi, incompatible interaction
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
GO:0030275molecular_functionLRR domain binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18784.1.S1_at--84--711Chr11:5793008..5793032 (25 bp)
ATGAGGCAGCTTACTTCGCTACAGT
LOC_Os11g10570
OsAffx.18784.1.S1_at--455--6331Chr11:5792968..5792992 (25 bp)
GATGCAGTATCATGGAGTCACTACC
LOC_Os11g10570
OsAffx.18784.1.S1_at--1134--2951Chr11:5792941..5792965 (25 bp)
AATGGTTAGAACTCACCTCTCTCGA
LOC_Os11g10570
OsAffx.18784.1.S1_at--1018--1411Chr11:5792872..5792896 (25 bp)
AGACAATGTGTGACAACCTCACCTC
LOC_Os11g10570
OsAffx.18784.1.S1_at--908--9311Chr11:5792849..5792873 (25 bp)
TCCCTGCAGCCACTAACATTGGAAA
LOC_Os11g10570
OsAffx.18784.1.S1_at--88--2291Chr11:5792825..5792849 (25 bp)
AAATGCGTTAGAACTCCTTCTCTAC
LOC_Os11g10570
OsAffx.18784.1.S1_at--626--2311Chr11:5792797..5792821 (25 bp)
AAAGGATGGGCAACCTCAACTCTCT
LOC_Os11g10570
OsAffx.18784.1.S1_at--132--7671Chr11:5792726..5792750 (25 bp)
GGGATCACATGTGTACAGCACCTGA
LOC_Os11g10570
OsAffx.18784.1.S1_at--18--4811Chr11:5792709..5792733 (25 bp)
GCACCTGAGTTTAGAAGGCTTTCCT
LOC_Os11g10570
OsAffx.18784.1.S1_at--232--8071Chr11:5792665..5792689 (25 bp)
GGAGCATGAGGCAACTCACTTCACT
LOC_Os11g10570
OsAffx.18784.1.S1_at--1018--2051Chr11:5792580..5792604 (25 bp)
ACTTGCCTCTCTCAAATGGTTGACG
LOC_Os11g10570
Target Sequence 
ATGAGGCAGCTTACTTCGCTACAGTCACTAAATCTGGATGGATGCAGTATCATGGAGTCACTACCACAATGGTTAGAACT
CACCTCTCTCGAAAACCTGAGATTGAGGTACCGCAAAAATCTGAATGATTTGCAACAGACAATGTGTGACAACCTCACCT
CCCTGCAGCCACTAACATTGGAAAAATGCGTTAGAACTCCTTCTCTACCTGAAAGGATGGGCAACCTCAACTCTCTGAAA
GAACTAAAAGACGACCAGGCAGAGCAGCCAAGATTGTTGGGTGGGATCACATGTGTACAGCACCTGAGTTTAGAAGGCTT
TCCTGATCTGCTGGACTTGCAAGGGAGCATGAGGCAACTCACTTCACTAACATCACTACATCTGTATCAATGCGATAGCA
TGACATCGCTACCACAATGGTTAGGAGAACTTGCCTCTCTCAAATGGTTGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis