Browse Element(s) Details


OsAffx.18790.1.S1_at

Description tigr:9639.m01027
TID=OsAffx.18790.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AF527808 putative protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1085011/11Dirigent-like protein
LOC_Os11g108405/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10820NANA11+5958154..5965049retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10830Os.46995.1.S1_x_at1/1111+5965379..5968306retrotransposon protein, putative, unclassified
LOC_Os11g10840OsAffx.18790.1.S1_at5/1111+5969788..5969991hypothetical protein
LOC_Os11g10850OsAffx.18790.1.S1_at11/1111+5973885..5974454Dirigent-like protein
LOC_Os11g10860Os.47463.1.S1_x_at6/1111+5976232..5985786transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10860Os.14491.2.S1_x_at5/1111+5976232..5985786transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10870Os.55238.1.S1_at11/1111+5991976..5992860Dirigent-like protein, expressed
LOC_Os11g10880OsAffx.30922.1.S1_s_at11/1111+5994073..5994651hypothetical protein
LOC_Os11g10880OsAffx.30922.1.S1_at11/1111+5994073..5994651hypothetical protein
LOC_Os11g10880OsAffx.30922.1.S1_x_at11/1111+5994073..5994651hypothetical protein
LOC_Os11g10880OsAffx.18792.1.S1_x_at5/1111+5994073..5994651hypothetical protein
LOC_Os11g10890OsAffx.7068.1.S1_at11/1111+5997375..5997976expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18790.1.S1_at--641--891Chr11:5974216..5974240 (25 bp)
CGGAGGGCGGCGTGTTGTCGGACCT
LOC_Os11g10850
OsAffx.18790.1.S1_at--1060--4651Chr11:5974225..5974249 (25 bp)
GCGTGTTGTCGGACCTGAGCCTGCA
LOC_Os11g10850
OsAffx.18790.1.S1_at--471--8811Chr11:5974228..5974252 (25 bp)
TGTTGTCGGACCTGAGCCTGCACAT
LOC_Os11g10850
OsAffx.18790.1.S1_at--183--8732Chr11:5974231..5974255 (25 bp)
TGTCGGACCTGAGCCTGCACATGGT
LOC_Os11g10850
OsAffx.18790.1.S1_at--4--8112Chr11:5974235..5974259 (25 bp)
GGACCTGAGCCTGCACATGGTGCTG
LOC_Os11g10850
OsAffx.18790.1.S1_at--285--4112Chr11:5974294..5974318 (25 bp)
CGAAGGGCCGCATCGACATGGACGC
LOC_Os11g10850
OsAffx.18790.1.S1_at--908--2872Chr11:5974296..5974320 (25 bp)
AAGGGCCGCATCGACATGGACGCCG
LOC_Os11g10850
OsAffx.18790.1.S1_at--101--4152Chr11:5974369..5974393 (25 bp)
CGCGCGGGTACATGGTCACCAAGAA
LOC_Os11g10850
OsAffx.18790.1.S1_at--350--4672Chr11:5974372..5974396 (25 bp)
GCGGGTACATGGTCACCAAGAACTA
LOC_Os11g10850
OsAffx.18790.1.S1_at--235--7692Chr11:5974374..5974398 (25 bp)
GGGTACATGGTCACCAAGAACTACG
LOC_Os11g10850
OsAffx.18790.1.S1_at--191--9951Chr11:5974395..5974419 (25 bp)
TACGACTACAGCCTCGCCACCGGTG
LOC_Os11g10850
Target Sequence 
CGGAGGGCGGCGTGTTGTCGGACCTGAGCCTGCACATGGTGCTGGAGGCCGGCGAGCACCGCGGCAGCTCGGTGACGGCG
AAGGGCCGCATCGACATGGACGCCGGCGAGCGCGAGTCGGTGGTGATCGGCGGCACGGGGCGGTTCCGGCTCGCGCGCGG
GTACATGGTCACCAAGAACTACGACTACAGCCTCGCCACCGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18790.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis