Browse Element(s) Details


OsAffx.18792.1.S1_x_at

Description tigr:9639.m01036
TID=OsAffx.18792.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1094011/11hypothetical protein
LOC_Os11g108805/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10900Os.27691.1.S1_x_at1/1111+6006118..6011823retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10910Os.54534.1.S1_at10/1111+6016440..6019565Eukaryotic aspartyl protease family protein, expressed
LOC_Os11g10920OsAffx.31532.1.S1_at11/1111+6026010..6029909carboxyl-terminal peptidase, putative, expressed
LOC_Os11g10920Os.41248.3.A1_at1/1111+6026010..6029909carboxyl-terminal peptidase, putative, expressed
LOC_Os11g10930OsAffx.18791.1.S1_at10/1111+6031123..6032236hypothetical protein
LOC_Os11g10940OsAffx.18792.1.S1_x_at11/1111+6034635..6035188hypothetical protein
LOC_Os11g10940OsAffx.30922.1.S1_s_at11/1111+6034635..6035188hypothetical protein
LOC_Os11g10940OsAffx.30922.1.S1_x_at4/1111+6034635..6035188hypothetical protein
LOC_Os11g10950NANA11+6040065..6041559hypothetical protein
LOC_Os11g10960NANA11+6044464..6044850retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10970OsAffx.22947.2.S1_x_at4/1111+6045659..6052050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10970OsAffx.22947.1.S1_x_at4/1111+6045659..6052050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10970OsAffx.22947.5.S1_x_at3/1111+6045659..6052050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10970OsAffx.22947.3.S1_x_at1/1111+6045659..6052050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10980Os.9996.2.S1_at11/1111+6054813..6061259pyruvate kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18792.1.S1_x_at--1044--5931Chr11:6034689..6034713 (25 bp)
GAGCAGCAGCCTAGCCGCACCGCCA
LOC_Os11g10940
OsAffx.18792.1.S1_x_at--938--3491Chr11:6034712..6034736 (25 bp)
CATGGCAGACCACCAGCAGCCGGCG
LOC_Os11g10940
OsAffx.18792.1.S1_x_at--29--6391Chr11:6034755..6034928 (25 bp)
GATCCCCTCTGCATATCCGGAGCGG
LOC_Os11g10940
OsAffx.18792.1.S1_x_at--1064--4472Chr11:6034970..6034994 (25 bp)
GCCGGCGGCAATGAGTCTGAATCTG
LOC_Os11g10940
OsAffx.18792.1.S1_x_at--1082--2992Chr11:6034979..6035003 (25 bp)
AATGAGTCTGAATCTGCACTGCCCC
LOC_Os11g10940
OsAffx.18792.1.S1_x_at--613--7112Chr11:6035007..6035031 (25 bp)
GTCAGCTTGATCGTCCGGACAGCAG
LOC_Os11g10940
OsAffx.18792.1.S1_x_at--924--8132Chr11:6035023..6035047 (25 bp)
GGACAGCAGTGGCTTGCCTACTACT
LOC_Os11g10940
OsAffx.18792.1.S1_x_at--33--9192Chr11:6035037..6035061 (25 bp)
TGCCTACTACTCACCAATCATGGAT
LOC_Os11g10940
OsAffx.18792.1.S1_x_at--556--811Chr11:6035056..6035080 (25 bp)
ATGGATTTACCATGAACCCGTCGCC
LOC_Os11g10940
OsAffx.18792.1.S1_x_at--1136--7931Chr11:6035058..6035082 (25 bp)
GGATTTACCATGAACCCGTCGCCAT
LOC_Os11g10940
OsAffx.18792.1.S1_x_at--694--171Chr11:6035060..6035084 (25 bp)
ATTTACCATGAACCCGTCGCCATGC
LOC_Os11g10940
Target Sequence 
GAGCAGCAGCCTAGCCGCACCGCCATGGCAGACCACCAGCAGCCGGCGGCCACCGCGGCGCCGTGCGATCCCCTCTGCAT
ATCCGGAGCGGCGGCCGGCGCGACTCCGGAGGCCATGGCGGCGGCGGCGATGGCCGGCGGCAATGAGTCTGAATCTGCAC
TGCCCCCTCGTCAGCTTGATCGTCCGGACAGCAGTGGCTTGCCTACTACTCACCAATCATGGATTTACCATGAACCCGTC
GCCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18792.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis