Browse Element(s) Details


Os.54534.1.S1_at

Description gb:AK105540.1
DB_XREF= gi:32990749
TID=Os.54534.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54534 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-H09, full insert sequence.
FL= gb:AK105540.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1091010/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10870Os.55238.1.S1_at11/1111+5991976..5992860Dirigent-like protein, expressed
LOC_Os11g10880OsAffx.30922.1.S1_s_at11/1111+5994073..5994651hypothetical protein
LOC_Os11g10880OsAffx.30922.1.S1_at11/1111+5994073..5994651hypothetical protein
LOC_Os11g10880OsAffx.30922.1.S1_x_at11/1111+5994073..5994651hypothetical protein
LOC_Os11g10880OsAffx.18792.1.S1_x_at5/1111+5994073..5994651hypothetical protein
LOC_Os11g10890OsAffx.7068.1.S1_at11/1111+5997375..5997976expressed protein
LOC_Os11g10900Os.27691.1.S1_x_at1/1111+6006118..6011823retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10910Os.54534.1.S1_at10/1111+6016440..6019565Eukaryotic aspartyl protease family protein, expressed
LOC_Os11g10920OsAffx.31532.1.S1_at11/1111+6026010..6029909carboxyl-terminal peptidase, putative, expressed
LOC_Os11g10920Os.41248.3.A1_at1/1111+6026010..6029909carboxyl-terminal peptidase, putative, expressed
LOC_Os11g10930OsAffx.18791.1.S1_at10/1111+6031123..6032236hypothetical protein
LOC_Os11g10940OsAffx.18792.1.S1_x_at11/1111+6034635..6035188hypothetical protein
LOC_Os11g10940OsAffx.30922.1.S1_s_at11/1111+6034635..6035188hypothetical protein
LOC_Os11g10940OsAffx.30922.1.S1_x_at4/1111+6034635..6035188hypothetical protein
LOC_Os11g10950NANA11+6040065..6041559hypothetical protein
LOC_Os11g10960NANA11+6044464..6044850retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54534.1.S1_at--1043--7831Chr11:6017002..6017026 (25 bp)
GGTACACGAAGATGGTCGCACGCAA
LOC_Os11g10910
Os.54534.1.S1_at--800--9671Chr11:6016948..6016972 (25 bp)
TCACCGCGATCTCTGTCGATGGAGA
LOC_Os11g10910
Os.54534.1.S1_at--790--9331Chr11:6016910..6016934 (25 bp)
TCGCCGAGCGTCTTCAGTCGAAAGG
LOC_Os11g10910
Os.54534.1.S1_at--284--5711Chr11:6016874..6016898 (25 bp)
GACTCAGGTTCAGAGCTGTCCTACA
LOC_Os11g10910
Os.54534.1.S1_at--1092--1371Chr11:6016845..6016869 (25 bp)
AGACCGTGCGTTGTCCGTGCTGAGC
LOC_Os11g10910
Os.54534.1.S1_at--87--1651Chr11:6016768..6016792 (25 bp)
AGCGCAACTGCTACGACATGAGGAG
LOC_Os11g10910
Os.54534.1.S1_at--950--251Chr11:6016718..6016742 (25 bp)
ATATCCCTGCACTTCGATGATGGAG
LOC_Os11g10910
Os.54534.1.S1_at--1103--6231Chr11:6016700..6016724 (25 bp)
GATGGAGCTCGGTTCGATCTCGGCA
LOC_Os11g10910
Os.54534.1.S1_at--114--5731Chr11:6016611..6016635 (25 bp)
GACTGAATCTGTCTCCATTATAGGA
LOC_Os11g10910
Os.54534.1.S1_at--385--8291Chr11:6016532..6016556 (25 bp)
GGCATTGGACCATCAGGAGCTTGTT
LOC_Os11g10910
Os.54534.1.S1_at--883--5235Chr05:7623377..7623463 (25 bp)
GAATAACTATTCTACACCTCCAAAA
NONE
Target Sequence 
GGTACACGAAGATGGTCGCACGCAAGAAAAACACAGAATTGTTCTTCGTTGATCTCACCGCGATCTCTGTCGATGGAGAG
AGGCTCGGCTTGTCGCCGAGCGTCTTCAGTCGAAAGGGCGTCGTGTTCGACTCAGGTTCAGAGCTGTCCTACATCCCAGA
CCGTGCGTTGTCCGTGCTGAGCCAGCGGATTCGCGAGCTGCTGCTGAAACGCGGGGCGGCGGAGGAGGAGAGCGAGCGCA
ACTGCTACGACATGAGGAGTGTTGATGAGGGGGACATGCCAGCCATATCCCTGCACTTCGATGATGGAGCTCGGTTCGAT
CTCGGCAGCCATGGCGTGTTCGTCGAGAGATCGGTGCAGGAGCAGGACGTGTGGTGCCTGGCGTTTGCGCCGACTGAATC
TGTCTCCATTATAGGAAGCCTGATGCAGACTTCCAAGGAGGTTGTGTATGACTTGAAAAGGCAGCTGATTGGCATTGGAC
CATCAGGAGCTTGTTAGTTAGTTATTGGGTTGTGTGTGTGTATATATATATATATAGAGTAGCTCTATTGTACACCCCTC
CCTTAGAATAACTATTCTACACCTCCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54534.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis