Browse Element(s) Details


OsAffx.7068.1.S1_at

Description tigr:9639.m01031
TID=OsAffx.7068.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1089011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10850OsAffx.18790.1.S1_at11/1111+5973885..5974454Dirigent-like protein
LOC_Os11g10860Os.47463.1.S1_x_at6/1111+5976232..5985786transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10860Os.14491.2.S1_x_at5/1111+5976232..5985786transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10870Os.55238.1.S1_at11/1111+5991976..5992860Dirigent-like protein, expressed
LOC_Os11g10880OsAffx.30922.1.S1_s_at11/1111+5994073..5994651hypothetical protein
LOC_Os11g10880OsAffx.30922.1.S1_at11/1111+5994073..5994651hypothetical protein
LOC_Os11g10880OsAffx.30922.1.S1_x_at11/1111+5994073..5994651hypothetical protein
LOC_Os11g10880OsAffx.18792.1.S1_x_at5/1111+5994073..5994651hypothetical protein
LOC_Os11g10890OsAffx.7068.1.S1_at11/1111+5997375..5997976expressed protein
LOC_Os11g10900Os.27691.1.S1_x_at1/1111+6006118..6011823retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10910Os.54534.1.S1_at10/1111+6016440..6019565Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7068.1.S1_at--1024--331Chr11:5997920..5997944 (25 bp)
ATACACTCAGCCTTAATCCTTGCAT
LOC_Os11g10890
OsAffx.7068.1.S1_at--566--9671Chr11:5997914..5997938 (25 bp)
TCAGCCTTAATCCTTGCATTACTTC
LOC_Os11g10890
OsAffx.7068.1.S1_at--1089--4271Chr11:5997910..5997934 (25 bp)
CCTTAATCCTTGCATTACTTCTCTA
LOC_Os11g10890
OsAffx.7068.1.S1_at--942--3031Chr11:5997906..5997930 (25 bp)
AATCCTTGCATTACTTCTCTATAAG
LOC_Os11g10890
OsAffx.7068.1.S1_at--612--4311Chr11:5997903..5997927 (25 bp)
CCTTGCATTACTTCTCTATAAGAGT
LOC_Os11g10890
OsAffx.7068.1.S1_at--120--351Chr11:5997886..5997910 (25 bp)
ATAAGAGTAGAGACGCCAATGGAGC
LOC_Os11g10890
OsAffx.7068.1.S1_at--1080--10031Chr11:5997879..5997903 (25 bp)
TAGAGACGCCAATGGAGCTCCGCTT
LOC_Os11g10890
OsAffx.7068.1.S1_at--397--1391Chr11:5997876..5997900 (25 bp)
AGACGCCAATGGAGCTCCGCTTCCT
LOC_Os11g10890
OsAffx.7068.1.S1_at--438--6371Chr11:5997641..5997760 (25 bp)
GATCCCCTCCGCATAGTTGTGCGTG
LOC_Os11g10890
OsAffx.7068.1.S1_at--479--4951Chr11:5997631..5997651 (21 bp)
GCATAGTTGTGCGTGCATCCGGCTC
LOC_Os11g10890
OsAffx.7068.1.S1_at--251--471Chr11:5997489..5997513 (25 bp)
ATCTCCGCTTGACCATGAACCCGTG
LOC_Os11g10890
Target Sequence 
ATACACTCAGCCTTAATCCTTGCATTACTTCTCTATAAGAGTAGAGACGCCAATGGAGCTCCGCTTCCTCCTTCTAGTCC
TAGTCCTTCTCGCTCCCCTCCTGCCCGGCACCACCGGAGATCAGCAGCACGCCCACTTGCCCGCTGCCGCCGCCGGCGGC
AACACCACCACGGCGCCGTCGCGCGATCCCCTCCGCATAGTTGTGCGTGCATCCGGCTCCGGCACCGGCGGCGGTGCGTC
TCCGTCAGCCACGGCGGCGGCGGCGGCAGGCGATGATGCATCCACTCCTCCTCCTCCACAGCTTAGCCGTCCCAACCGTG
ACCTGCCTACCGTCCCATCTCCGCTTGACCATGAACCCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7068.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis