Browse Element(s) Details


Os.55238.1.S1_at

Description gb:AK107711.1
DB_XREF= gi:32992920
TID=Os.55238.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55238 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-D10, full insert sequence.
FL= gb:AK107711.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1087011/11Dirigent-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10830Os.46995.1.S1_x_at1/1111+5965379..5968306retrotransposon protein, putative, unclassified
LOC_Os11g10840OsAffx.18790.1.S1_at5/1111+5969788..5969991hypothetical protein
LOC_Os11g10850OsAffx.18790.1.S1_at11/1111+5973885..5974454Dirigent-like protein
LOC_Os11g10860Os.47463.1.S1_x_at6/1111+5976232..5985786transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10860Os.14491.2.S1_x_at5/1111+5976232..5985786transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10870Os.55238.1.S1_at11/1111+5991976..5992860Dirigent-like protein, expressed
LOC_Os11g10880OsAffx.30922.1.S1_s_at11/1111+5994073..5994651hypothetical protein
LOC_Os11g10880OsAffx.30922.1.S1_at11/1111+5994073..5994651hypothetical protein
LOC_Os11g10880OsAffx.30922.1.S1_x_at11/1111+5994073..5994651hypothetical protein
LOC_Os11g10880OsAffx.18792.1.S1_x_at5/1111+5994073..5994651hypothetical protein
LOC_Os11g10890OsAffx.7068.1.S1_at11/1111+5997375..5997976expressed protein
LOC_Os11g10900Os.27691.1.S1_x_at1/1111+6006118..6011823retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10910Os.54534.1.S1_at10/1111+6016440..6019565Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55238.1.S1_at--671--7671Chr11:5992342..5992366 (25 bp)
GGGTTCTACATGTTCTCGTCGCGGA
LOC_Os11g10870
Os.55238.1.S1_at--269--8791Chr11:5992382..5992406 (25 bp)
TGTTCAGCGCCACCATGGAGTTCAC
LOC_Os11g10870
Os.55238.1.S1_at--229--7691Chr11:5992519..5992543 (25 bp)
GGGTACGGCCTCCTCAGGACGCACT
LOC_Os11g10870
Os.55238.1.S1_at--507--9051Chr11:5992574..5992598 (25 bp)
TGCAGATCGACTTGTACCTCAGCGT
LOC_Os11g10870
Os.55238.1.S1_at--937--9971Chr11:5992588..5992612 (25 bp)
TACCTCAGCGTGTAGAAGATCGACT
LOC_Os11g10870
Os.55238.1.S1_at--338--5711Chr11:5992609..5992633 (25 bp)
GACTACAAGTTCTTGCACACGATCT
LOC_Os11g10870
Os.55238.1.S1_at--163--3272Chr11:5992624..5992648 (25 bp)
CACACGATCTTAATTGCGCTTACCG
LOC_Os11g10870
Os.55238.1.S1_at--968--71Chr11:5992636..5992660 (25 bp)
ATTGCGCTTACCGTGTACTTACCGA
LOC_Os11g10870
Os.55238.1.S1_at--236--6591Chr11:5992683..5992707 (25 bp)
GATTCCATATATTTTCATTCCACGG
LOC_Os11g10870
Os.55238.1.S1_at--3--3591Chr11:5992688..5992712 (25 bp)
CATATATTTTCATTCCACGGAGGAG
LOC_Os11g10870
Os.55238.1.S1_at--528--10512Chr11:5992804..5992828 (25 bp)
TTCAAAGCTTGTCTTATACTCCCTC
LOC_Os11g10870
Target Sequence 
GGGTTCTACATGTTCTCGTCGCGGACGGACTCGGCGCTGCTGTTCAGCGCCACCATGGAGTTCACGGNGGGGGTGCACCG
CGGCGGCGCCGTGTCGGTGCTCGCCAGGGACGCCATCCTCGACGAGGTGAGGGAGCTGCCGGTGGTCGGCGGCGCCGGCG
TGCTCCGCGGCGCCGCCGGGTACGGCCTCCTCAGGACGCACTCCTTCAACGCCACCACCAACAANGCCGTCCTGCAGATC
GACTTGTACCTCAGCGTGTAGAAGATCGACTACAAGTTCTTGCACACGATCTTAATTGCGCTTACCGTGTACTTACCGAN
TACAAGTTACTCAAANGGTGTTGATTCCATATATTTTCATTCCACGGAGGAGGAAGAATTTGTCGGTTTTAAATGAATTA
GCACATATGAGTCAATATTTATGAGTGGTTTTGTAATNGTNTAGNNNNANTACAAGNTAAGAGTTCAAAGCTTGTCTTAT
ACTCCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55238.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis