Browse Element(s) Details


Os.41248.3.A1_at

Description gb:NM_193673.1
DB_XREF= gi:34914429
GEN=P0516D04.15
TID=Os.41248.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41248 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0516D04.15 (P0516D04.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0516D04.15 (P0516D04.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g109201/11carboxyl-terminal peptidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10900Os.27691.1.S1_x_at1/1111+6006118..6011823retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10910Os.54534.1.S1_at10/1111+6016440..6019565Eukaryotic aspartyl protease family protein, expressed
LOC_Os11g10920OsAffx.31532.1.S1_at11/1111+6026010..6029909carboxyl-terminal peptidase, putative, expressed
LOC_Os11g10920Os.41248.3.A1_at1/1111+6026010..6029909carboxyl-terminal peptidase, putative, expressed
LOC_Os11g10930OsAffx.18791.1.S1_at10/1111+6031123..6032236hypothetical protein
LOC_Os11g10940OsAffx.18792.1.S1_x_at11/1111+6034635..6035188hypothetical protein
LOC_Os11g10940OsAffx.30922.1.S1_s_at11/1111+6034635..6035188hypothetical protein
LOC_Os11g10940OsAffx.30922.1.S1_x_at4/1111+6034635..6035188hypothetical protein
LOC_Os11g10950NANA11+6040065..6041559hypothetical protein
LOC_Os11g10960NANA11+6044464..6044850retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10970OsAffx.22947.2.S1_x_at4/1111+6045659..6052050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10970OsAffx.22947.1.S1_x_at4/1111+6045659..6052050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10970OsAffx.22947.5.S1_x_at3/1111+6045659..6052050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10970OsAffx.22947.3.S1_x_at1/1111+6045659..6052050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10980Os.9996.2.S1_at11/1111+6054813..6061259pyruvate kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41248.3.A1_at--213--9351Chr01:18984669..18984693 (25 bp)
TCGACCGTTAAGAGAGAGTCCAACT
NONE
Os.41248.3.A1_at--208--6111Chr01:18984654..18984678 (25 bp)
GAGTCCAACTGCACTTATTCTGGTT
NONE
Os.41248.3.A1_at--252--10231Chr01:18984627..18984651 (25 bp)
TATTGAGACATTGAGCTCGGCTGTT
NONE
Os.41248.3.A1_at--1129--51Chr01:18984618..18984642 (25 bp)
ATTGAGCTCGGCTGTTGTGGGCCTT
NONE
Os.41248.3.A1_at--1025--3851Chr01:18984588..18984612 (25 bp)
CTGTCAGGTTGTGGCCGAATCAGGC
NONE
Os.41248.3.A1_at--1073--391Chr01:18984570..18984594 (25 bp)
ATCAGGCCGAATGGCCTATCGGGCT
NONE
Os.41248.3.A1_at--1066--4291Chr01:18984556..18984580 (25 bp)
CCTATCGGGCTGCTATTGCTTTGCT
NONE
Os.41248.3.A1_at--918--10271NONE
TTTGCTATGGTTTTCGACAGCGGCA
NONE
Os.41248.3.A1_at--480--6231Chr01:18983623..18983843 (25 bp)
GATGGCAACACGGAAGAAGACGCTG
NONE
Os.41248.3.A1_at--695--1771NONE
ACCGGTATCCACACGAACAATGTCG
NONE
Os.41248.3.A1_at--456--10815Chr10:7573686..7573710 (25 bp)
TTGGAGGGTCGAGCGATTTCCACAA
NONE
Target Sequence 
TCGACCGTTAAGAGAGAGTCCAACTGCACTTATTCTGGTTATTATTGAGACATTGAGCTCGGCTGTTGTGGGCCTTGTGG
GCTGTCAGGTTGTGGCCGAATCAGGCCGAATGGCCTATCGGGCTGCTATTGCTTTGCTATGGTTTTCGACAGCGGCAGCG
GCGGGTGTAGGCAACGGCGGCGGCGATGGCAACACGGAAGAAGACGCTGAGAAGTCGAAGGAACTCTCGCGAAGTAGCGC
GTGTCGATGTAGAGGAAGTAGTCGATCGCACCGGCTCGACCTTCTCCTCCTCGTGCGTTCTCCTCGCCGTACTCCCACGC
CGATCAGCACCGCAAACCAGTGGCGCCTCTACCGGTATCCACACGAACAATGTCGGATAAATATCACTACTGGAGAAATG
ATCTTTGGAGGGTCGAGCGATTTCCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41248.3.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis