Browse Element(s) Details


OsAffx.18798.1.S1_at

Description tigr:9639.m01083
TID=OsAffx.18798.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1140011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11360OsAffx.30927.1.S1_at11/1111+6302316..6303143embryogenesis transmembrane protein, putative
LOC_Os11g11370Os.6226.1.S1_at11/1111+6303982..6306264expressed protein
LOC_Os11g11380OsAffx.19542.3.S1_x_at5/1111+6310590..6314320retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g11390Os.10134.1.S1_at11/1111+6316734..631941460S ribosomal protein L10-1, putative, expressed
LOC_Os11g11390Os.11021.2.S1_x_at5/1111+6316734..631941460S ribosomal protein L10-1, putative, expressed
LOC_Os11g11400OsAffx.18798.1.S1_at11/1111+6327183..6327572hypothetical protein
LOC_Os11g11410Os.54127.1.S1_at11/1111+6331361..6337777AUX/IAA family protein, expressed
LOC_Os11g11420OsAffx.18799.1.S1_at10/1111+6343960..6345226IAA18, putative
LOC_Os11g11430OsAffx.18799.1.S1_at11/1111+6352091..6353868expressed protein
LOC_Os11g11430OsAffx.18799.1.S1_s_at11/1111+6352091..6353868expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18798.1.S1_at--330--11Chr11:6327515..6327539 (25 bp)
ATAGGTCCTCACAAAAGGACTCCGA
LOC_Os11g11400
OsAffx.18798.1.S1_at--1157--2911Chr11:6327501..6327525 (25 bp)
AAGGACTCCGACAAGGAACCATCGT
LOC_Os11g11400
OsAffx.18798.1.S1_at--253--2231Chr11:6327491..6327515 (25 bp)
ACAAGGAACCATCGTCTGAGGAGGA
LOC_Os11g11400
OsAffx.18798.1.S1_at--522--6171Chr11:6327468..6327492 (25 bp)
GAGGATGATGACGAGACCCATGATG
LOC_Os11g11400
OsAffx.18798.1.S1_at--168--9731Chr11:6327406..6327430 (25 bp)
TAACCAAGGTGGGTGCAGAAGCGAA
LOC_Os11g11400
OsAffx.18798.1.S1_at--556--6131Chr11:6327372..6327396 (25 bp)
GAGGGCCTCGATTGCCATGGTCATG
LOC_Os11g11400
OsAffx.18798.1.S1_at--248--3711Chr11:6327343..6327367 (25 bp)
CTATGGCGGCTAGCACGAGTGACAC
LOC_Os11g11400
OsAffx.18798.1.S1_at--122--1371Chr11:6327290..6327314 (25 bp)
AGAGCAGGTGCCAAAGGAGGCCCAT
LOC_Os11g11400
OsAffx.18798.1.S1_at--736--3291Chr11:6327279..6327303 (25 bp)
CAAAGGAGGCCCATGTGCAGTCGAG
LOC_Os11g11400
OsAffx.18798.1.S1_at--942--4231Chr11:6327240..6327264 (25 bp)
CCGATGCGCCGTGGTGTCAGAGTCA
LOC_Os11g11400
OsAffx.18798.1.S1_at--751--7111Chr11:6327225..6327249 (25 bp)
GTCAGAGTCAGCCACAAGCACGCAG
LOC_Os11g11400
Target Sequence 
ATAGGTCCTCACAAAAGGACTCCGACAAGGAACCATCGTCTGAGGAGGAGGATGATGACGAGACCCATGATGAGGACGAG
AGCAGCGGAGGAGGTTGTGGAGGCAGAGGTAACCAAGGTGGGTGCAGAAGCGAAGGCCGAGGAGAGGGCCTCGATTGCCA
TGGTCATGGCGGCTATGGCGGCTAGCACGAGTGACACTGTTGAGGAGGAGGGTATGGCTGGAGCCAGAGCAGGTGCCAAA
GGAGGCCCATGTGCAGTCGAGGTGCCGGAGAGGGCCCGATGCGCCGTGGTGTCAGAGTCAGCCACAAGCACGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis